Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29573 | 3' | -55.3 | NC_006151.1 | + | 141562 | 0.67 | 0.889235 |
Target: 5'- ------gGGUCCGGCGcGAuCCUCCGCc -3' miRNA: 3'- cuacacaCCAGGCUGC-UUcGGAGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 141484 | 0.66 | 0.920334 |
Target: 5'- ------cGaGUCCGA--GAGCCUCCGCg -3' miRNA: 3'- cuacacaC-CAGGCUgcUUCGGAGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 137060 | 0.66 | 0.914588 |
Target: 5'- cGGUGUaccgcGUGGagcuggcgcaCCGGCGccAGGCCUUCGCg -3' miRNA: 3'- -CUACA-----CACCa---------GGCUGC--UUCGGAGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 131976 | 0.69 | 0.80182 |
Target: 5'- --cGUGUGGUCgCGguacucgcGCGAguaGGCCUCCa- -3' miRNA: 3'- cuaCACACCAG-GC--------UGCU---UCGGAGGcg -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 128139 | 0.66 | 0.92584 |
Target: 5'- ----cGUGGgcccgCCGuACGAGGCCaggCUGCg -3' miRNA: 3'- cuacaCACCa----GGC-UGCUUCGGa--GGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 124288 | 0.67 | 0.875177 |
Target: 5'- --cGUGUGGUCCGggagcacguACGcGGCCaucacgaaCCGCu -3' miRNA: 3'- cuaCACACCAGGC---------UGCuUCGGa-------GGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 107290 | 0.66 | 0.92584 |
Target: 5'- -cUGUacGG-CCGGCcGAGCUUCCGCa -3' miRNA: 3'- cuACAcaCCaGGCUGcUUCGGAGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 106233 | 0.66 | 0.92584 |
Target: 5'- uGGUGgccgcgGUGG-CCGGCGA-GCCgaCGCa -3' miRNA: 3'- -CUACa-----CACCaGGCUGCUuCGGagGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 103998 | 0.67 | 0.882318 |
Target: 5'- ----cGUGGcggCCGugGAGGCgCgCCGCg -3' miRNA: 3'- cuacaCACCa--GGCugCUUCG-GaGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 102777 | 0.71 | 0.706048 |
Target: 5'- ---cUGaUGGU-CGGCGAcGCCUCCGCg -3' miRNA: 3'- cuacAC-ACCAgGCUGCUuCGGAGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 102356 | 0.68 | 0.844486 |
Target: 5'- ----cGUGG-CCGGCGAcgacGCgUCCGCg -3' miRNA: 3'- cuacaCACCaGGCUGCUu---CGgAGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 100359 | 0.7 | 0.726002 |
Target: 5'- --cGUcGUGGacgCCGugGgcGCCUuCCGCg -3' miRNA: 3'- cuaCA-CACCa--GGCugCuuCGGA-GGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 98626 | 0.66 | 0.933144 |
Target: 5'- ----aGUGGUgcgccgccuUCGACGAGGCCcuggcgggcgcgcgcUCCGCc -3' miRNA: 3'- cuacaCACCA---------GGCUGCUUCGG---------------AGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 89511 | 0.66 | 0.918065 |
Target: 5'- gGGUGUggcgcagcggacGUGGUCCGccucgagcagcgcCGAGGCCgguggaggCCGCg -3' miRNA: 3'- -CUACA------------CACCAGGCu------------GCUUCGGa-------GGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 89264 | 0.66 | 0.908603 |
Target: 5'- --cGUcGUGGUCgacggcgccgCGGCGAuGGCCgCCGCg -3' miRNA: 3'- cuaCA-CACCAG----------GCUGCU-UCGGaGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 88190 | 0.66 | 0.925301 |
Target: 5'- cGGUGUcggcggcGUGGUCggaccaGGCGAGgcgcGCCUCCGg -3' miRNA: 3'- -CUACA-------CACCAGg-----CUGCUU----CGGAGGCg -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 88094 | 0.66 | 0.922566 |
Target: 5'- aGGUGUaGUcgacgggcccgucgaGGUCCGACagcgggcGGGCgCUCCGCa -3' miRNA: 3'- -CUACA-CA---------------CCAGGCUGc------UUCG-GAGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 86779 | 0.66 | 0.914001 |
Target: 5'- cGAUGUGggcgGGgcuUCUGccuaaaaGCGggGCCUCCccgGCg -3' miRNA: 3'- -CUACACa---CC---AGGC-------UGCuuCGGAGG---CG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 84477 | 0.67 | 0.882318 |
Target: 5'- ----cGUGGUUCGccuuCGAGGCCgCUGCg -3' miRNA: 3'- cuacaCACCAGGCu---GCUUCGGaGGCG- -5' |
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29573 | 3' | -55.3 | NC_006151.1 | + | 71766 | 0.66 | 0.93613 |
Target: 5'- ----cGUGGUCCugcggcagcggcGGCGggGgCUgCCGCa -3' miRNA: 3'- cuacaCACCAGG------------CUGCuuCgGA-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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