Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 124288 | 0.67 | 0.875177 |
|
Target: 5'- --cGUGUGGUCCGggagcacguACGcGGCCaucacgaaCCGCu -3' miRNA: 3'- cuaCACACCAGGC---------UGCuUCGGa-------GGCG- -5' |
|||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 64212 | 0.67 | 0.875177 |
|
Target: 5'- ------aGGUCCGGCGugggcGCCUCgGCg -3' miRNA: 3'- cuacacaCCAGGCUGCuu---CGGAGgCG- -5' |
|||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 102356 | 0.68 | 0.844486 |
|
Target: 5'- ----cGUGG-CCGGCGAcgacGCgUCCGCg -3' miRNA: 3'- cuacaCACCaGGCUGCUu---CGgAGGCG- -5' |
|||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 4427 | 0.69 | 0.819408 |
|
Target: 5'- cAUGUcggcGUaGGcCCGGCGGAGgCUCUGCa -3' miRNA: 3'- cUACA----CA-CCaGGCUGCUUCgGAGGCG- -5' |
|||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 34557 | 0.69 | 0.80182 |
|
Target: 5'- ------cGGUCCGACGgcGgUUCCGCu -3' miRNA: 3'- cuacacaCCAGGCUGCuuCgGAGGCG- -5' |
|||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 131976 | 0.69 | 0.80182 |
|
Target: 5'- --cGUGUGGUCgCGguacucgcGCGAguaGGCCUCCa- -3' miRNA: 3'- cuaCACACCAG-GC--------UGCU---UCGGAGGcg -5' |
|||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 45092 | 0.7 | 0.735862 |
|
Target: 5'- cGcgGUGUGGcgUCGAUGggGUCgugCCGUg -3' miRNA: 3'- -CuaCACACCa-GGCUGCuuCGGa--GGCG- -5' |
|||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 24066 | 0.7 | 0.735862 |
|
Target: 5'- aGGUGUGUGuGUCCuaccgcuCGGAGCCggcCCGUu -3' miRNA: 3'- -CUACACAC-CAGGcu-----GCUUCGGa--GGCG- -5' |
|||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 100359 | 0.7 | 0.726002 |
|
Target: 5'- --cGUcGUGGacgCCGugGgcGCCUuCCGCg -3' miRNA: 3'- cuaCA-CACCa--GGCugCuuCGGA-GGCG- -5' |
|||||||
| 29573 | 3' | -55.3 | NC_006151.1 | + | 102777 | 0.71 | 0.706048 |
|
Target: 5'- ---cUGaUGGU-CGGCGAcGCCUCCGCg -3' miRNA: 3'- cuacAC-ACCAgGCUGCUuCGGAGGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home