miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29573 5' -59.5 NC_006151.1 + 86976 0.66 0.799629
Target:  5'- aCCGCCGccACCgC-CGcUCGCCCUCg--- -3'
miRNA:   3'- -GGCGGCa-UGG-GaGC-AGCGGGAGagag -5'
29573 5' -59.5 NC_006151.1 + 46804 0.66 0.799629
Target:  5'- aUGCgGcGCCC--GUCGCCCUCUgcCUCu -3'
miRNA:   3'- gGCGgCaUGGGagCAGCGGGAGA--GAG- -5'
29573 5' -59.5 NC_006151.1 + 40303 0.66 0.79876
Target:  5'- uCCaCCGgcUCCUCGagGCCCuucuccuccgucuUCUCUCc -3'
miRNA:   3'- -GGcGGCauGGGAGCagCGGG-------------AGAGAG- -5'
29573 5' -59.5 NC_006151.1 + 5398 0.66 0.794393
Target:  5'- cCCGCCGUcCCCggCGaggccgaguccguccUCGUCCU-UCUCg -3'
miRNA:   3'- -GGCGGCAuGGGa-GC---------------AGCGGGAgAGAG- -5'
29573 5' -59.5 NC_006151.1 + 14869 0.66 0.790875
Target:  5'- -aGcCCGUGCCCUCccCGCCgUUCUCg- -3'
miRNA:   3'- ggC-GGCAUGGGAGcaGCGG-GAGAGag -5'
29573 5' -59.5 NC_006151.1 + 101650 0.66 0.790875
Target:  5'- gCCGCCGUGCCCg---CGCUCUa---- -3'
miRNA:   3'- -GGCGGCAUGGGagcaGCGGGAgagag -5'
29573 5' -59.5 NC_006151.1 + 107487 0.66 0.790875
Target:  5'- gCUGCCGcUGCCCcCGUCGCCgC-CggUCg -3'
miRNA:   3'- -GGCGGC-AUGGGaGCAGCGG-GaGagAG- -5'
29573 5' -59.5 NC_006151.1 + 97927 0.66 0.787335
Target:  5'- gCCGCCGaggccgcgcccGCCCUCGUCGagggcgagccacgCCUC-CUCc -3'
miRNA:   3'- -GGCGGCa----------UGGGAGCAGCg------------GGAGaGAG- -5'
29573 5' -59.5 NC_006151.1 + 70638 0.66 0.781987
Target:  5'- gCGCCGUGgCCgcgCGcgaggCGCCCgUC-CUCa -3'
miRNA:   3'- gGCGGCAUgGGa--GCa----GCGGG-AGaGAG- -5'
29573 5' -59.5 NC_006151.1 + 23267 0.66 0.772972
Target:  5'- aUCGCCGUGgacgaCCUCGUCGUCagaCUC-Cg -3'
miRNA:   3'- -GGCGGCAUg----GGAGCAGCGGga-GAGaG- -5'
29573 5' -59.5 NC_006151.1 + 127567 0.66 0.772972
Target:  5'- gCCGCCGccgGCgCCUCGuUCGCCgUCc--- -3'
miRNA:   3'- -GGCGGCa--UG-GGAGC-AGCGGgAGagag -5'
29573 5' -59.5 NC_006151.1 + 18344 0.66 0.772972
Target:  5'- cCCGUCGU--CCUCGUCGCUgcugaaCUCgucCUCg -3'
miRNA:   3'- -GGCGGCAugGGAGCAGCGG------GAGa--GAG- -5'
29573 5' -59.5 NC_006151.1 + 80598 0.66 0.76384
Target:  5'- gUGCCGU-CCCUcuccccccuccCGUCuCCCgUCUCUCc -3'
miRNA:   3'- gGCGGCAuGGGA-----------GCAGcGGG-AGAGAG- -5'
29573 5' -59.5 NC_006151.1 + 31023 0.66 0.76384
Target:  5'- gCCGCCGcgGCCCUCG-CGgCCCg----- -3'
miRNA:   3'- -GGCGGCa-UGGGAGCaGC-GGGagagag -5'
29573 5' -59.5 NC_006151.1 + 15981 0.66 0.754597
Target:  5'- cCCaCCGUccGCCCcaUCGuUUGCCC-CUCUCc -3'
miRNA:   3'- -GGcGGCA--UGGG--AGC-AGCGGGaGAGAG- -5'
29573 5' -59.5 NC_006151.1 + 3646 0.67 0.745254
Target:  5'- gCGCCGgagaGCCC-C-UCGUCCUC-CUCg -3'
miRNA:   3'- gGCGGCa---UGGGaGcAGCGGGAGaGAG- -5'
29573 5' -59.5 NC_006151.1 + 82845 0.67 0.735817
Target:  5'- gUCGUCGUugCCUcCGUCGCggUCUC-Ca -3'
miRNA:   3'- -GGCGGCAugGGA-GCAGCGggAGAGaG- -5'
29573 5' -59.5 NC_006151.1 + 67064 0.67 0.735817
Target:  5'- cCUGCUGgcgGCCUUCGacaCGCCgCUCUuCUCc -3'
miRNA:   3'- -GGCGGCa--UGGGAGCa--GCGG-GAGA-GAG- -5'
29573 5' -59.5 NC_006151.1 + 96619 0.67 0.735817
Target:  5'- aCGUCGUGCCCgagggCG-CGCagcgCCUCgagCUCg -3'
miRNA:   3'- gGCGGCAUGGGa----GCaGCG----GGAGa--GAG- -5'
29573 5' -59.5 NC_006151.1 + 6255 0.67 0.726295
Target:  5'- gCCGCCGUcgggGCCggacgCGaUGCCCUCUucCUCg -3'
miRNA:   3'- -GGCGGCA----UGGga---GCaGCGGGAGA--GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.