miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29574 3' -61.4 NC_006151.1 + 65756 0.84 0.060322
Target:  5'- gGCCUCguCCCCGUCCCCG-UCGCCGccGGCg -3'
miRNA:   3'- -CGGAG--GGGGCAGGGGCuAGCGGC--UUG- -5'
29574 3' -61.4 NC_006151.1 + 26542 0.83 0.066875
Target:  5'- aUCUUCCCCGUCCCCGccGUCGuCCGAGCc -3'
miRNA:   3'- cGGAGGGGGCAGGGGC--UAGC-GGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 139934 0.8 0.116976
Target:  5'- cGCCgugggCCgCCGUCCUCGAguucggCGCCGAGCa -3'
miRNA:   3'- -CGGa----GGgGGCAGGGGCUa-----GCGGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 41443 0.78 0.157418
Target:  5'- aGCCUCCCCCGcugCCaCCGAUUgGCCGGc- -3'
miRNA:   3'- -CGGAGGGGGCa--GG-GGCUAG-CGGCUug -5'
29574 3' -61.4 NC_006151.1 + 42472 0.78 0.161306
Target:  5'- uCCUCCCCCaacUCCCCGggCGCCGuuuAGCg -3'
miRNA:   3'- cGGAGGGGGc--AGGGGCuaGCGGC---UUG- -5'
29574 3' -61.4 NC_006151.1 + 64165 0.76 0.200357
Target:  5'- cCUUCgCCCCGUCCCCGcccccGUCGCCGcccGCg -3'
miRNA:   3'- cGGAG-GGGGCAGGGGC-----UAGCGGCu--UG- -5'
29574 3' -61.4 NC_006151.1 + 101804 0.75 0.230765
Target:  5'- cGCCgucgCCCCCGUCCCCGccGUCcCCGucucGGCg -3'
miRNA:   3'- -CGGa---GGGGGCAGGGGC--UAGcGGC----UUG- -5'
29574 3' -61.4 NC_006151.1 + 3664 0.74 0.277257
Target:  5'- uCCUCCUcgCCGUCCCCGGggCGgCGGGCc -3'
miRNA:   3'- cGGAGGG--GGCAGGGGCUa-GCgGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 36607 0.73 0.303179
Target:  5'- aGCCUCCCCCG-CCgCCGG--GCCGGu- -3'
miRNA:   3'- -CGGAGGGGGCaGG-GGCUagCGGCUug -5'
29574 3' -61.4 NC_006151.1 + 62809 0.73 0.303179
Target:  5'- uCUUCCCCCGUCCUCGGccaUCGUCucACa -3'
miRNA:   3'- cGGAGGGGGCAGGGGCU---AGCGGcuUG- -5'
29574 3' -61.4 NC_006151.1 + 5395 0.73 0.323817
Target:  5'- cGCC-CCgCCGUCCCCGGcgagGCCGAGu -3'
miRNA:   3'- -CGGaGGgGGCAGGGGCUag--CGGCUUg -5'
29574 3' -61.4 NC_006151.1 + 127783 0.73 0.323817
Target:  5'- cCCUCCCCC-UCCCCcgcCGCCGcGCg -3'
miRNA:   3'- cGGAGGGGGcAGGGGcuaGCGGCuUG- -5'
29574 3' -61.4 NC_006151.1 + 79077 0.72 0.338148
Target:  5'- aCC-CCCaCCGcCCCCGcgCGCgCGAGCg -3'
miRNA:   3'- cGGaGGG-GGCaGGGGCuaGCG-GCUUG- -5'
29574 3' -61.4 NC_006151.1 + 28146 0.72 0.352934
Target:  5'- cGCCUCUCCCGgucgaUCCCCGucggcGUCGuuGGGg -3'
miRNA:   3'- -CGGAGGGGGC-----AGGGGC-----UAGCggCUUg -5'
29574 3' -61.4 NC_006151.1 + 62692 0.72 0.360497
Target:  5'- cGCCccugUCCCuuGUCCCCGGUC-CCGc-- -3'
miRNA:   3'- -CGG----AGGGggCAGGGGCUAGcGGCuug -5'
29574 3' -61.4 NC_006151.1 + 23115 0.72 0.368172
Target:  5'- uCCUCCUCgG-CCCCGcgccccuccuccGUCGCCGGGCc -3'
miRNA:   3'- cGGAGGGGgCaGGGGC------------UAGCGGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 39838 0.71 0.375958
Target:  5'- cGUCUCCUgCGgCCgCCGGggccUCGCCGAGCu -3'
miRNA:   3'- -CGGAGGGgGCaGG-GGCU----AGCGGCUUG- -5'
29574 3' -61.4 NC_006151.1 + 10607 0.71 0.375958
Target:  5'- cCCUCCUCCcUCCCCGcgCGCCc-GCg -3'
miRNA:   3'- cGGAGGGGGcAGGGGCuaGCGGcuUG- -5'
29574 3' -61.4 NC_006151.1 + 37230 0.71 0.383855
Target:  5'- gGCCUCCCCgG-CCCCGGcC-CCGGAg -3'
miRNA:   3'- -CGGAGGGGgCaGGGGCUaGcGGCUUg -5'
29574 3' -61.4 NC_006151.1 + 79132 0.71 0.383855
Target:  5'- gGCCgCCCCauCGUCgCCGGUCGCgGGAg -3'
miRNA:   3'- -CGGaGGGG--GCAGgGGCUAGCGgCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.