Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 38915 | 0.67 | 0.616343 |
Target: 5'- -gGCCCGCgCCuCGuGGAccAGGaGGUCUUc -3' miRNA: 3'- aaUGGGCG-GG-GCuCCU--UCC-CCAGAGa -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 2190 | 0.67 | 0.596324 |
Target: 5'- -cGCCCGaggcCCCCGcGGGccGGuGGGUCUCc -3' miRNA: 3'- aaUGGGC----GGGGCuCCU--UC-CCCAGAGa -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 12998 | 0.67 | 0.595325 |
Target: 5'- -cACCCGUCCCGGGGGAuucccugucccucGGGG-Cg-- -3' miRNA: 3'- aaUGGGCGGGGCUCCUU-------------CCCCaGaga -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 140391 | 0.68 | 0.566501 |
Target: 5'- cUGCgUGCugCCCGAGGAccuGGGGGaCUCg -3' miRNA: 3'- aAUGgGCG--GGGCUCCU---UCCCCaGAGa -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 29243 | 0.68 | 0.566501 |
Target: 5'- -gGCCgCGCCCCGAGGGacAGGGaa-UCc -3' miRNA: 3'- aaUGG-GCGGGGCUCCU--UCCCcagAGa -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 41541 | 0.68 | 0.563538 |
Target: 5'- --cCCCGCCCgCGGacccccggugcgacGGAAGGGGcaggCUCg -3' miRNA: 3'- aauGGGCGGG-GCU--------------CCUUCCCCa---GAGa -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 33229 | 0.68 | 0.54683 |
Target: 5'- ----gCGCCCCGgcgggcGGGAGGGGGUC-Cg -3' miRNA: 3'- aauggGCGGGGC------UCCUUCCCCAGaGa -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 20469 | 0.68 | 0.54683 |
Target: 5'- -cGCCgGucCCCCGGGGGggcgcGGGGGUCgUCg -3' miRNA: 3'- aaUGGgC--GGGGCUCCU-----UCCCCAG-AGa -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 15021 | 0.68 | 0.527381 |
Target: 5'- -cGCCCGaCCCCGAGGAGGuGcGcGUC-Ca -3' miRNA: 3'- aaUGGGC-GGGGCUCCUUC-C-C-CAGaGa -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 13387 | 0.68 | 0.526415 |
Target: 5'- -cACCCGCCuCCGGGGAcgcgccggccaauGGGGGa---- -3' miRNA: 3'- aaUGGGCGG-GGCUCCU-------------UCCCCagaga -5' |
|||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 141807 | 0.78 | 0.142414 |
Target: 5'- --uCCCGCCCCGAGGGcacgggccgguucGGGGGUCcCg -3' miRNA: 3'- aauGGGCGGGGCUCCU-------------UCCCCAGaGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home