Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 27798 | 0.7 | 0.408868 |
Target: 5'- -cACCCGCCcaacccaacCCGGGGGAGGGGa---- -3' miRNA: 3'- aaUGGGCGG---------GGCUCCUUCCCCagaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 8728 | 0.71 | 0.391311 |
Target: 5'- -cGCCuCGgUCCGAGGAGGGGGgugcccgggcgugUCUCg -3' miRNA: 3'- aaUGG-GCgGGGCUCCUUCCCC-------------AGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 8376 | 0.71 | 0.375054 |
Target: 5'- --cCCCGcCCCCGGGGGgguccgggaugggGGGGGUCa-- -3' miRNA: 3'- aauGGGC-GGGGCUCCU-------------UCCCCAGaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 43276 | 0.72 | 0.337197 |
Target: 5'- -cGCuCUGCUuuGGGGggGGGGUcCUCg -3' miRNA: 3'- aaUG-GGCGGggCUCCuuCCCCA-GAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 89158 | 0.73 | 0.308412 |
Target: 5'- -cGCCCGCCUCGGGcGAggcgggcgcGGGGGUCg-- -3' miRNA: 3'- aaUGGGCGGGGCUC-CU---------UCCCCAGaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 40095 | 0.73 | 0.294739 |
Target: 5'- -gGCCgGCCCCggcGAGGAcGGGGaCUCUg -3' miRNA: 3'- aaUGGgCGGGG---CUCCUuCCCCaGAGA- -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 49710 | 0.73 | 0.281542 |
Target: 5'- -cACCCccuCCCCG-GGAGGGGGUgCUCg -3' miRNA: 3'- aaUGGGc--GGGGCuCCUUCCCCA-GAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 38593 | 0.74 | 0.254763 |
Target: 5'- ---gCCGCCCCGGGGAcggcgaggaggacgAGGGGcUCUCc -3' miRNA: 3'- aaugGGCGGGGCUCCU--------------UCCCC-AGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 70124 | 0.75 | 0.233427 |
Target: 5'- -cGCCCGCgCgCCGcAGGAGGGGGUC-Cg -3' miRNA: 3'- aaUGGGCG-G-GGC-UCCUUCCCCAGaGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 33887 | 0.75 | 0.233427 |
Target: 5'- -gACCC-CCCCGGGGGcGGGGGcCUCg -3' miRNA: 3'- aaUGGGcGGGGCUCCU-UCCCCaGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 141807 | 0.78 | 0.142414 |
Target: 5'- --uCCCGCCCCGAGGGcacgggccgguucGGGGGUCcCg -3' miRNA: 3'- aauGGGCGGGGCUCCU-------------UCCCCAGaGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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