Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29575 | 3' | -55.4 | NC_006151.1 | + | 84973 | 0.74 | 0.537307 |
Target: 5'- gCCAcgcUCGUCGCGgagcGCCCGCagGuCUCGCg -3' miRNA: 3'- -GGU---AGCAGUGUa---CGGGCGagC-GAGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 140327 | 0.75 | 0.44066 |
Target: 5'- gCAUCGUCACcuacacacuggugAUGCUgGCUCGCaUCGCc -3' miRNA: 3'- gGUAGCAGUG-------------UACGGgCGAGCG-AGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 75645 | 0.77 | 0.380605 |
Target: 5'- gCCGUCGUCGgGgGCCgGCUCGC-CGCc -3' miRNA: 3'- -GGUAGCAGUgUaCGGgCGAGCGaGUG- -5' |
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29575 | 3' | -55.4 | NC_006151.1 | + | 11009 | 0.79 | 0.270104 |
Target: 5'- cCCGgc-UCGCccGCCCGCUCGCUCGCc -3' miRNA: 3'- -GGUagcAGUGuaCGGGCGAGCGAGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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