Results 41 - 44 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29575 | 3' | -55.4 | NC_006151.1 | + | 49385 | 0.66 | 0.905546 |
Target: 5'- gCCAUcCGUCGCcgcugGCCCGCaCGCccuUCAg -3' miRNA: 3'- -GGUA-GCAGUGua---CGGGCGaGCG---AGUg -5' |
|||||||
29575 | 3' | -55.4 | NC_006151.1 | + | 43068 | 0.67 | 0.871475 |
Target: 5'- aCCAUCGccaccgcCGCGUGUCCGCucccccccgugUCGCgCGCu -3' miRNA: 3'- -GGUAGCa------GUGUACGGGCG-----------AGCGaGUG- -5' |
|||||||
29575 | 3' | -55.4 | NC_006151.1 | + | 39521 | 0.69 | 0.797089 |
Target: 5'- uCCAUCGUgGgcCcgGCCUGCUuCGCcCGCg -3' miRNA: 3'- -GGUAGCAgU--GuaCGGGCGA-GCGaGUG- -5' |
|||||||
29575 | 3' | -55.4 | NC_006151.1 | + | 11009 | 0.79 | 0.270104 |
Target: 5'- cCCGgc-UCGCccGCCCGCUCGCUCGCc -3' miRNA: 3'- -GGUagcAGUGuaCGGGCGAGCGAGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home