miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 3' -55.4 NC_006151.1 + 50442 0.68 0.832007
Target:  5'- gCCggCGgccugggCACc-GCCCGCgggCGCUCGCg -3'
miRNA:   3'- -GGuaGCa------GUGuaCGGGCGa--GCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 106981 0.68 0.832007
Target:  5'- cCCAUCGagaaCGCGUGCCUGg-CGC-CGCa -3'
miRNA:   3'- -GGUAGCa---GUGUACGGGCgaGCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 131262 0.68 0.823534
Target:  5'- cCCGUCGgacCACGcGCCCccCUCGCUCu- -3'
miRNA:   3'- -GGUAGCa--GUGUaCGGGc-GAGCGAGug -5'
29575 3' -55.4 NC_006151.1 + 73973 0.68 0.814884
Target:  5'- gCCAcCGUgGcCAUGCCCGCguccggCGC-CACc -3'
miRNA:   3'- -GGUaGCAgU-GUACGGGCGa-----GCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 67975 0.69 0.806066
Target:  5'- aCCAcgcaGUCGCGgcgGCCCGCcggCGC-CGCg -3'
miRNA:   3'- -GGUag--CAGUGUa--CGGGCGa--GCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 39521 0.69 0.797089
Target:  5'- uCCAUCGUgGgcCcgGCCUGCUuCGCcCGCg -3'
miRNA:   3'- -GGUAGCAgU--GuaCGGGCGA-GCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 121874 0.69 0.797089
Target:  5'- aCGcCGcUCACGUGCgCGCUgcgccuggCGCUCGCg -3'
miRNA:   3'- gGUaGC-AGUGUACGgGCGA--------GCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 97556 0.69 0.787962
Target:  5'- gCCGUCGUCGCc-GCCgaggcgcaGCUCGCggucCACg -3'
miRNA:   3'- -GGUAGCAGUGuaCGGg-------CGAGCGa---GUG- -5'
29575 3' -55.4 NC_006151.1 + 81501 0.69 0.787962
Target:  5'- gCCGUCGgcgagagCGCG-GCCCGCgugaGCUCGg -3'
miRNA:   3'- -GGUAGCa------GUGUaCGGGCGag--CGAGUg -5'
29575 3' -55.4 NC_006151.1 + 95834 0.69 0.769291
Target:  5'- aCA-CG-CACAcGCCCGUggggCGCUCGCu -3'
miRNA:   3'- gGUaGCaGUGUaCGGGCGa---GCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 84352 0.7 0.750125
Target:  5'- ---aCGUCGCcgGCCCGCggcggugaUCGCgaUCGCg -3'
miRNA:   3'- gguaGCAGUGuaCGGGCG--------AGCG--AGUG- -5'
29575 3' -55.4 NC_006151.1 + 60630 0.7 0.740381
Target:  5'- gCCGUCGUCGgggcggggcucCcgGCCCGCgccgcguccUCGCUCcCg -3'
miRNA:   3'- -GGUAGCAGU-----------GuaCGGGCG---------AGCGAGuG- -5'
29575 3' -55.4 NC_006151.1 + 136619 0.7 0.720614
Target:  5'- gCCGUCaacGUCACGgaccccgcggcGCCCGUggggCGCUCGCc -3'
miRNA:   3'- -GGUAG---CAGUGUa----------CGGGCGa---GCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 127553 0.71 0.680234
Target:  5'- gCGUCGUCGuCGUGgCCGCcgccggcgccUCGUUCGCc -3'
miRNA:   3'- gGUAGCAGU-GUACgGGCG----------AGCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 128588 0.72 0.649497
Target:  5'- aCAUCGUCucGCGcgGCCCGCgCGC-CACc -3'
miRNA:   3'- gGUAGCAG--UGUa-CGGGCGaGCGaGUG- -5'
29575 3' -55.4 NC_006151.1 + 97837 0.72 0.639212
Target:  5'- -gGUCGUCACGUGCgCGCgcagCGCgucgucCGCg -3'
miRNA:   3'- ggUAGCAGUGUACGgGCGa---GCGa-----GUG- -5'
29575 3' -55.4 NC_006151.1 + 78995 0.72 0.628921
Target:  5'- cCCGUC--CACAacacccCCCGCUCGCUCGCc -3'
miRNA:   3'- -GGUAGcaGUGUac----GGGCGAGCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 71005 0.72 0.608355
Target:  5'- gCCAUCGUgggCGcCAUGCgCCGCgaGCUCGCg -3'
miRNA:   3'- -GGUAGCA---GU-GUACG-GGCGagCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 86299 0.72 0.606301
Target:  5'- gCGUCGUCAacUGCCCGCagcugggggccgUGCUCGCc -3'
miRNA:   3'- gGUAGCAGUguACGGGCGa-----------GCGAGUG- -5'
29575 3' -55.4 NC_006151.1 + 91466 0.73 0.557378
Target:  5'- gCCAggGUCACGUaGaCCUGCUCGC-CGCg -3'
miRNA:   3'- -GGUagCAGUGUA-C-GGGCGAGCGaGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.