miRNA display CGI


Results 61 - 80 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 18807 0.67 0.598593
Target:  5'- aCCGUGACguacucggccgcggUGGCGACGAgcguguagucccaggUGGcgacGUGGCCg -3'
miRNA:   3'- -GGCGCUG--------------GCCGCUGCU---------------ACCc---CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 113084 0.67 0.597637
Target:  5'- gCGCGGCCGuCGcCGccgccaccgGGGGCggGGCCg -3'
miRNA:   3'- gGCGCUGGCcGCuGCua-------CCCCG--CCGG- -5'
29575 5' -62.9 NC_006151.1 + 29209 0.67 0.597637
Target:  5'- gCGCGGCgGgGUGGgGAUGggucaccgccGGGuCGGCCg -3'
miRNA:   3'- gGCGCUGgC-CGCUgCUAC----------CCC-GCCGG- -5'
29575 5' -62.9 NC_006151.1 + 13380 0.67 0.597637
Target:  5'- cCCGCGGcacccgccuCCGGgGACGcgccggccaAUGGGG-GaGCCg -3'
miRNA:   3'- -GGCGCU---------GGCCgCUGC---------UACCCCgC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 68304 0.67 0.597637
Target:  5'- gCGCGcGCCcaCGACGgcGaGGGCGGCg -3'
miRNA:   3'- gGCGC-UGGccGCUGCuaC-CCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 640 0.67 0.597637
Target:  5'- aCGUGacGCCGGCuuCcg-GGGcGCGGCCg -3'
miRNA:   3'- gGCGC--UGGCCGcuGcuaCCC-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 19502 0.67 0.597637
Target:  5'- uCCGgGGCCucGGgGACGcaGGcGCGGCCc -3'
miRNA:   3'- -GGCgCUGG--CCgCUGCuaCCcCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 5915 0.67 0.597637
Target:  5'- gCCGgGGUCGGCGGCc--GGGGCccggagccGGCCc -3'
miRNA:   3'- -GGCgCUGGCCGCUGcuaCCCCG--------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 38184 0.67 0.606256
Target:  5'- aCCGUGgcGCCGcuggugcgcuacaGCGugGAcGGGGCccgcgcccgcgaGGCCg -3'
miRNA:   3'- -GGCGC--UGGC-------------CGCugCUaCCCCG------------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 141286 0.67 0.606256
Target:  5'- gCUGCGGuCCGaUGACGGUGGGcucguacGCGGgCg -3'
miRNA:   3'- -GGCGCU-GGCcGCUGCUACCC-------CGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 73208 0.67 0.606256
Target:  5'- cCCGCgGGCCaGGCccGCGGgcaccUGGGGCagcaucuGGCCg -3'
miRNA:   3'- -GGCG-CUGG-CCGc-UGCU-----ACCCCG-------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 133321 0.67 0.607215
Target:  5'- nCCGUGuCgaGGCG-CGcc-GGGCGGCCg -3'
miRNA:   3'- -GGCGCuGg-CCGCuGCuacCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 57457 0.67 0.607215
Target:  5'- cCCGCGucgGCCaGGUGccGCGccGcGGCGGCCu -3'
miRNA:   3'- -GGCGC---UGG-CCGC--UGCuaCcCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 24885 0.67 0.607215
Target:  5'- gCC-CGGCCGGCGggccACGAaGacGCGGCCc -3'
miRNA:   3'- -GGcGCUGGCCGC----UGCUaCccCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 107338 0.67 0.607215
Target:  5'- gCCGUG-UCGGCGACGcccacccGGcccGCGGCCc -3'
miRNA:   3'- -GGCGCuGGCCGCUGCua-----CCc--CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 66815 0.67 0.607215
Target:  5'- aCGaCGA-CGGCGACGAggaggaUGGGGgGGa- -3'
miRNA:   3'- gGC-GCUgGCCGCUGCU------ACCCCgCCgg -5'
29575 5' -62.9 NC_006151.1 + 31629 0.67 0.607215
Target:  5'- gCCGCG-CCGGC-ACGAgcgcacGcGGGCGcGCg -3'
miRNA:   3'- -GGCGCuGGCCGcUGCUa-----C-CCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 2201 0.67 0.607215
Target:  5'- cCCGCgGGCCGGUgggucuccacGGCGcccccGGcGGCGGCg -3'
miRNA:   3'- -GGCG-CUGGCCG----------CUGCua---CC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 121709 0.67 0.607215
Target:  5'- gCgGCGGCUcGUGGCGGuccUGGGGCaGGUg -3'
miRNA:   3'- -GgCGCUGGcCGCUGCU---ACCCCG-CCGg -5'
29575 5' -62.9 NC_006151.1 + 122748 0.67 0.59668
Target:  5'- gCGCGGCCGcGagcucgacaucauCGACGGgcugcucGuGGGCGGCUg -3'
miRNA:   3'- gGCGCUGGC-C-------------GCUGCUa------C-CCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.