Results 21 - 40 of 390 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29575 | 5' | -62.9 | NC_006151.1 | + | 71621 | 0.77 | 0.146326 |
Target: 5'- aCCGCGGCCuucucgccgggGGgGACGGUcGGGG-GGCCg -3' miRNA: 3'- -GGCGCUGG-----------CCgCUGCUA-CCCCgCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 41485 | 0.77 | 0.16107 |
Target: 5'- aCgGCGACCGcGUGGCGcgaggggagccaAUGGGGCGGgCg -3' miRNA: 3'- -GgCGCUGGC-CGCUGC------------UACCCCGCCgG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 5090 | 0.77 | 0.146326 |
Target: 5'- gCCGCGGCgGGCGccgGCGGagacGGuGGCGGCCc -3' miRNA: 3'- -GGCGCUGgCCGC---UGCUa---CC-CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 96942 | 0.76 | 0.177141 |
Target: 5'- aUCGCGGgCGGgagaGACGAUGGGGUGaGUCa -3' miRNA: 3'- -GGCGCUgGCCg---CUGCUACCCCGC-CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 118879 | 0.76 | 0.181376 |
Target: 5'- gCgGCGGCgCGGCGGCGAcgcGGccgccGGCGGCCu -3' miRNA: 3'- -GgCGCUG-GCCGCUGCUa--CC-----CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 91674 | 0.76 | 0.181376 |
Target: 5'- cCUGCG-CCGgguggugcGCGugGGUGGGGUGGCg -3' miRNA: 3'- -GGCGCuGGC--------CGCugCUACCCCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 19416 | 0.76 | 0.1857 |
Target: 5'- gCgGCGACCaccgcuccggGGUGACGAU-GGGCGGCUc -3' miRNA: 3'- -GgCGCUGG----------CCGCUGCUAcCCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 121227 | 0.76 | 0.185263 |
Target: 5'- cCCGaCGACUGGCgGGCGAucgUGGacgacgaguuccuGGCGGCCg -3' miRNA: 3'- -GGC-GCUGGCCG-CUGCU---ACC-------------CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 36042 | 0.76 | 0.191906 |
Target: 5'- gCCGCGGcuccuCCGGCGAgGAUcuccucuucggcccGGGCGGCCu -3' miRNA: 3'- -GGCGCU-----GGCCGCUgCUAc-------------CCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 133277 | 0.76 | 0.178824 |
Target: 5'- -gGCGAgCCGGCGGCGGcccacgucgagguucUccccgGGGGCGGCCc -3' miRNA: 3'- ggCGCU-GGCCGCUGCU---------------A-----CCCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 118004 | 0.76 | 0.172995 |
Target: 5'- gCCGCGucucgucucACCcGCGACGAUGGaGGCcgcGGCCa -3' miRNA: 3'- -GGCGC---------UGGcCGCUGCUACC-CCG---CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 112053 | 0.76 | 0.177141 |
Target: 5'- -gGCGGgCGGCGGCGGUGGuGGUggGGCUg -3' miRNA: 3'- ggCGCUgGCCGCUGCUACC-CCG--CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 50019 | 0.75 | 0.194621 |
Target: 5'- gCGCGGcCCGcGCGGCGcccccGGGcGCGGCCa -3' miRNA: 3'- gGCGCU-GGC-CGCUGCua---CCC-CGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 71772 | 0.75 | 0.203915 |
Target: 5'- cCUGCGGCagCGGCGGCG--GGGGCuGCCg -3' miRNA: 3'- -GGCGCUG--GCCGCUGCuaCCCCGcCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 57505 | 0.75 | 0.199221 |
Target: 5'- aCGCGcUCGGCcGCGgcGGcGGCGGCCg -3' miRNA: 3'- gGCGCuGGCCGcUGCuaCC-CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 68002 | 0.75 | 0.208705 |
Target: 5'- gCCGCGGCCacgggcucGGCGGCGuccaGGuccaGGCGGCCc -3' miRNA: 3'- -GGCGCUGG--------CCGCUGCua--CC----CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 131830 | 0.75 | 0.213592 |
Target: 5'- -aGCGucACCguGGUGAUGAgcGGGGCGGCCg -3' miRNA: 3'- ggCGC--UGG--CCGCUGCUa-CCCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 32075 | 0.75 | 0.194621 |
Target: 5'- gCCGCGACCGGCGAacgcaGAgagGGGacGCGGg- -3' miRNA: 3'- -GGCGCUGGCCGCUg----CUa--CCC--CGCCgg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 122956 | 0.75 | 0.22366 |
Target: 5'- gCCGCGgggggcgcggacGCCGGCGACGG-GGGcGuCGGCg -3' miRNA: 3'- -GGCGC------------UGGCCGCUGCUaCCC-C-GCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 78637 | 0.75 | 0.203915 |
Target: 5'- aCGcCGACgCGuGCGAgcUGGUGGaGGCGGCCg -3' miRNA: 3'- gGC-GCUG-GC-CGCU--GCUACC-CCGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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