miRNA display CGI


Results 41 - 60 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 121949 0.75 0.20582
Target:  5'- gCCGCcGCCGGCGACGAcgccgaggccuacuuUGagcgcaccauGGGCGGCg -3'
miRNA:   3'- -GGCGcUGGCCGCUGCU---------------AC----------CCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 122956 0.75 0.22366
Target:  5'- gCCGCGgggggcgcggacGCCGGCGACGG-GGGcGuCGGCg -3'
miRNA:   3'- -GGCGC------------UGGCCGCUGCUaCCC-C-GCCGg -5'
29575 5' -62.9 NC_006151.1 + 71772 0.75 0.203915
Target:  5'- cCUGCGGCagCGGCGGCG--GGGGCuGCCg -3'
miRNA:   3'- -GGCGCUG--GCCGCUGCuaCCCCGcCGG- -5'
29575 5' -62.9 NC_006151.1 + 109450 0.75 0.22366
Target:  5'- uUCGCGGCCGGCcccGACGccGGaGCGGCa -3'
miRNA:   3'- -GGCGCUGGCCG---CUGCuaCCcCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 91554 0.75 0.213592
Target:  5'- gCGCGGCCaGCGggGCGAUGGcGGCGcGCg -3'
miRNA:   3'- gGCGCUGGcCGC--UGCUACC-CCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 54076 0.75 0.199221
Target:  5'- gCGCgGACCcucuGCGGCGgcGGcGGCGGCCa -3'
miRNA:   3'- gGCG-CUGGc---CGCUGCuaCC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 103992 0.75 0.218576
Target:  5'- -gGCGGCCguGGCGGCcGUGGaGGCGcGCCg -3'
miRNA:   3'- ggCGCUGG--CCGCUGcUACC-CCGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 32075 0.75 0.194621
Target:  5'- gCCGCGACCGGCGAacgcaGAgagGGGacGCGGg- -3'
miRNA:   3'- -GGCGCUGGCCGCUg----CUa--CCC--CGCCgg -5'
29575 5' -62.9 NC_006151.1 + 66766 0.75 0.222125
Target:  5'- gCCGCGACggccgcccucgggaCGGCGGCGgcGGcGGCggGGCCc -3'
miRNA:   3'- -GGCGCUG--------------GCCGCUGCuaCC-CCG--CCGG- -5'
29575 5' -62.9 NC_006151.1 + 137518 0.75 0.218576
Target:  5'- gCCGCGcCgGGCGACGAggacuGGGCGGaCUg -3'
miRNA:   3'- -GGCGCuGgCCGCUGCUac---CCCGCC-GG- -5'
29575 5' -62.9 NC_006151.1 + 64533 0.75 0.213592
Target:  5'- gCCGCGGCC-GCGuCG--GGGGCGGCg -3'
miRNA:   3'- -GGCGCUGGcCGCuGCuaCCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 5241 0.74 0.228844
Target:  5'- gCCGCGcGgCGGCGGCGGgggcccggGGGGCGGa- -3'
miRNA:   3'- -GGCGC-UgGCCGCUGCUa-------CCCCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 89702 0.74 0.234129
Target:  5'- gCCGCGuccaggaacCCGGCGGCGccGGccGCGGCCg -3'
miRNA:   3'- -GGCGCu--------GGCCGCUGCuaCCc-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 9487 0.74 0.250601
Target:  5'- cCCGCGGCCgcGGCGugGGagagcGGGGCGuGUg -3'
miRNA:   3'- -GGCGCUGG--CCGCugCUa----CCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 51048 0.74 0.233596
Target:  5'- -gGUGACggUGGUGGCGAUGGugauggcGGCGGCCu -3'
miRNA:   3'- ggCGCUG--GCCGCUGCUACC-------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 82615 0.74 0.2563
Target:  5'- cCCGCGcGCgGGCGccGCGGUGGGcGCGGg- -3'
miRNA:   3'- -GGCGC-UGgCCGC--UGCUACCC-CGCCgg -5'
29575 5' -62.9 NC_006151.1 + 3736 0.74 0.245006
Target:  5'- uCCG-GGCCGGCGGCGG-GGGaGCuGGCg -3'
miRNA:   3'- -GGCgCUGGCCGCUGCUaCCC-CG-CCGg -5'
29575 5' -62.9 NC_006151.1 + 78714 0.74 0.250601
Target:  5'- gCCGCGA-CGGCGcCcGUGGGGCGcGCg -3'
miRNA:   3'- -GGCGCUgGCCGCuGcUACCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 10185 0.74 0.250601
Target:  5'- uCUGCGuucGCCGgucGCGGCGcgGGcGGCGGCUg -3'
miRNA:   3'- -GGCGC---UGGC---CGCUGCuaCC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 129520 0.74 0.250601
Target:  5'- gCCGCuuGCCGcCGACGggGGGGCccggGGCCg -3'
miRNA:   3'- -GGCGc-UGGCcGCUGCuaCCCCG----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.