miRNA display CGI


Results 61 - 80 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 10185 0.74 0.250601
Target:  5'- uCUGCGuucGCCGgucGCGGCGcgGGcGGCGGCUg -3'
miRNA:   3'- -GGCGC---UGGC---CGCUGCuaCC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 50620 0.74 0.238973
Target:  5'- gCCGCGGCagcgugcacgccuCGGCGACGGccGcGGGCGGaCCc -3'
miRNA:   3'- -GGCGCUG-------------GCCGCUGCUa-C-CCCGCC-GG- -5'
29575 5' -62.9 NC_006151.1 + 3736 0.74 0.245006
Target:  5'- uCCG-GGCCGGCGGCGG-GGGaGCuGGCg -3'
miRNA:   3'- -GGCgCUGGCCGCUGCUaCCC-CG-CCGg -5'
29575 5' -62.9 NC_006151.1 + 96711 0.74 0.245006
Target:  5'- gCCGgGGgCGGCGGCGGacgaGGaGGCGGCg -3'
miRNA:   3'- -GGCgCUgGCCGCUGCUa---CC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 119970 0.74 0.2563
Target:  5'- gCUGUGcCCGGCGACGAgcuuccUGGcGCGGCg -3'
miRNA:   3'- -GGCGCuGGCCGCUGCU------ACCcCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 128042 0.74 0.2563
Target:  5'- cCCGCGGCagCGGCGgcagcggcggcuGCGcgGGGGCGaCCg -3'
miRNA:   3'- -GGCGCUG--GCCGC------------UGCuaCCCCGCcGG- -5'
29575 5' -62.9 NC_006151.1 + 82615 0.74 0.2563
Target:  5'- cCCGCGcGCgGGCGccGCGGUGGGcGCGGg- -3'
miRNA:   3'- -GGCGC-UGgCCGC--UGCUACCC-CGCCgg -5'
29575 5' -62.9 NC_006151.1 + 129520 0.74 0.250601
Target:  5'- gCCGCuuGCCGcCGACGggGGGGCccggGGCCg -3'
miRNA:   3'- -GGCGc-UGGCcGCUGCuaCCCCG----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 51048 0.74 0.233596
Target:  5'- -gGUGACggUGGUGGCGAUGGugauggcGGCGGCCu -3'
miRNA:   3'- ggCGCUG--GCCGCUGCUACC-------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 89702 0.74 0.234129
Target:  5'- gCCGCGuccaggaacCCGGCGGCGccGGccGCGGCCg -3'
miRNA:   3'- -GGCGCu--------GGCCGCUGCuaCCc-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 9487 0.74 0.250601
Target:  5'- cCCGCGGCCgcGGCGugGGagagcGGGGCGuGUg -3'
miRNA:   3'- -GGCGCUGG--CCGCugCUa----CCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 7728 0.73 0.264457
Target:  5'- aCCgGCGACCGgacccgaaccgggaaGCGACGccGGGGCGGg- -3'
miRNA:   3'- -GG-CGCUGGC---------------CGCUGCuaCCCCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 29597 0.73 0.262105
Target:  5'- gCUGCGGCC-GCGGCGGcgGGGGCuGGUg -3'
miRNA:   3'- -GGCGCUGGcCGCUGCUa-CCCCG-CCGg -5'
29575 5' -62.9 NC_006151.1 + 68260 0.73 0.279544
Target:  5'- aCGCG-CgCGGCGACGGUcgcGGcgccgggcgccacGGCGGCCa -3'
miRNA:   3'- gGCGCuG-GCCGCUGCUA---CC-------------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 127397 0.73 0.262105
Target:  5'- gCCGCGGCCGaGuCGACGGgagcccgcGGGGUcGCCu -3'
miRNA:   3'- -GGCGCUGGC-C-GCUGCUa-------CCCCGcCGG- -5'
29575 5' -62.9 NC_006151.1 + 118152 0.73 0.286397
Target:  5'- gCCGCGGCggUGGCGcCGcUGGuGcGCGGCCu -3'
miRNA:   3'- -GGCGCUG--GCCGCuGCuACC-C-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 133392 0.73 0.262105
Target:  5'- gCgGCGGCCGGgGcCGAgcGGGCGGUCu -3'
miRNA:   3'- -GgCGCUGGCCgCuGCUacCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 6142 0.73 0.262105
Target:  5'- gCCGCGGCC-GCGAgGAc--GGCGGCCu -3'
miRNA:   3'- -GGCGCUGGcCGCUgCUaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 27627 0.73 0.280162
Target:  5'- gCC-CGGCCGcccCGACGGgugGGGGUGGCUg -3'
miRNA:   3'- -GGcGCUGGCc--GCUGCUa--CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 80027 0.73 0.274035
Target:  5'- uCgGCGAUCGGgGACGggGGaGGCGGg- -3'
miRNA:   3'- -GgCGCUGGCCgCUGCuaCC-CCGCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.