miRNA display CGI


Results 81 - 100 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 91742 0.73 0.268016
Target:  5'- aUCGCGGCgGGCGAgCGGgcucGGGCGGgCg -3'
miRNA:   3'- -GGCGCUGgCCGCU-GCUac--CCCGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 4180 0.73 0.273428
Target:  5'- gCGCGGCCgucaccuccucgaGGCaGGCGGgcccGaGGGCGGCCg -3'
miRNA:   3'- gGCGCUGG-------------CCG-CUGCUa---C-CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 7728 0.73 0.264457
Target:  5'- aCCgGCGACCGgacccgaaccgggaaGCGACGccGGGGCGGg- -3'
miRNA:   3'- -GG-CGCUGGC---------------CGCUGCuaCCCCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 27627 0.73 0.280162
Target:  5'- gCC-CGGCCGcccCGACGGgugGGGGUGGCUg -3'
miRNA:   3'- -GGcGCUGGCc--GCUGCUa--CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 127397 0.73 0.262105
Target:  5'- gCCGCGGCCGaGuCGACGGgagcccgcGGGGUcGCCu -3'
miRNA:   3'- -GGCGCUGGC-C-GCUGCUa-------CCCCGcCGG- -5'
29575 5' -62.9 NC_006151.1 + 9618 0.73 0.280162
Target:  5'- -aGgGGCCGGCGGCGAggGGGGaaGCg -3'
miRNA:   3'- ggCgCUGGCCGCUGCUa-CCCCgcCGg -5'
29575 5' -62.9 NC_006151.1 + 80027 0.73 0.274035
Target:  5'- uCgGCGAUCGGgGACGggGGaGGCGGg- -3'
miRNA:   3'- -GgCGCUGGCCgCUGCuaCC-CCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 68260 0.73 0.279544
Target:  5'- aCGCG-CgCGGCGACGGUcgcGGcgccgggcgccacGGCGGCCa -3'
miRNA:   3'- gGCGCuG-GCCGCUGCUA---CC-------------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 118152 0.73 0.286397
Target:  5'- gCCGCGGCggUGGCGcCGcUGGuGcGCGGCCu -3'
miRNA:   3'- -GGCGCUG--GCCGCuGCuACC-C-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 72557 0.73 0.29274
Target:  5'- gCGCGGCCGcGCGGgaGGgugGGGGCGGgUg -3'
miRNA:   3'- gGCGCUGGC-CGCUg-CUa--CCCCGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 5443 0.72 0.303118
Target:  5'- gCCGCGGgcgacggucucgaCGGCGACGGUGGuGGUGGa- -3'
miRNA:   3'- -GGCGCUg------------GCCGCUGCUACC-CCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 96085 0.72 0.305756
Target:  5'- gCGCGGCCGGCGAagagcaUGAgcgGGGuuGCGGgCa -3'
miRNA:   3'- gGCGCUGGCCGCU------GCUa--CCC--CGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 33320 0.72 0.326102
Target:  5'- aCCGgGACCGG-GACag-GGGGCGGg- -3'
miRNA:   3'- -GGCgCUGGCCgCUGcuaCCCCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 124123 0.72 0.333104
Target:  5'- gCCGcCGuCCGGCuccACGGUGGuGCGGCUg -3'
miRNA:   3'- -GGC-GCuGGCCGc--UGCUACCcCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 49204 0.72 0.340216
Target:  5'- aCGCuGACCGuGCGGCGcgGGGucccCGGCUc -3'
miRNA:   3'- gGCG-CUGGC-CGCUGCuaCCCc---GCCGG- -5'
29575 5' -62.9 NC_006151.1 + 122477 0.72 0.333104
Target:  5'- gCCGaGGCCGGgGACGcgGGcgagacGGCGcGCCg -3'
miRNA:   3'- -GGCgCUGGCCgCUGCuaCC------CCGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 29410 0.72 0.326102
Target:  5'- aCCGCGcggagaagGCuCGGUGugGccgcggGGGGCGGCg -3'
miRNA:   3'- -GGCGC--------UG-GCCGCugCua----CCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 137104 0.72 0.340216
Target:  5'- gUGCuGGCCGGgGACGccugGGGGCGcGCg -3'
miRNA:   3'- gGCG-CUGGCCgCUGCua--CCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 101933 0.72 0.32889
Target:  5'- cCCGUGGCCGGCGAgccaggaggaccUGAgcagcacgcacacgGucggcGGGCGGCCg -3'
miRNA:   3'- -GGCGCUGGCCGCU------------GCUa-------------C-----CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 105885 0.72 0.305756
Target:  5'- gCGCGGUCGGCGACaagcuGGCGGCCa -3'
miRNA:   3'- gGCGCUGGCCGCUGcuaccCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.