Results 61 - 80 of 390 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29575 | 5' | -62.9 | NC_006151.1 | + | 104809 | 0.74 | 0.245006 |
Target: 5'- gCCGCGACCuGGCGGCGgcGcGcGaCGGCCu -3' miRNA: 3'- -GGCGCUGG-CCGCUGCuaCcC-C-GCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 130677 | 0.74 | 0.247231 |
Target: 5'- cCCGCGggGCgCGGCGcAgGAUguccgggggcccgacGGGGCGGCCc -3' miRNA: 3'- -GGCGC--UG-GCCGC-UgCUA---------------CCCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 129520 | 0.74 | 0.250601 |
Target: 5'- gCCGCuuGCCGcCGACGggGGGGCccggGGCCg -3' miRNA: 3'- -GGCGc-UGGCcGCUGCuaCCCCG----CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 10185 | 0.74 | 0.250601 |
Target: 5'- uCUGCGuucGCCGgucGCGGCGcgGGcGGCGGCUg -3' miRNA: 3'- -GGCGC---UGGC---CGCUGCuaCC-CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 78714 | 0.74 | 0.250601 |
Target: 5'- gCCGCGA-CGGCGcCcGUGGGGCGcGCg -3' miRNA: 3'- -GGCGCUgGCCGCuGcUACCCCGC-CGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 9487 | 0.74 | 0.250601 |
Target: 5'- cCCGCGGCCgcGGCGugGGagagcGGGGCGuGUg -3' miRNA: 3'- -GGCGCUGG--CCGCugCUa----CCCCGC-CGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 82615 | 0.74 | 0.2563 |
Target: 5'- cCCGCGcGCgGGCGccGCGGUGGGcGCGGg- -3' miRNA: 3'- -GGCGC-UGgCCGC--UGCUACCC-CGCCgg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 134091 | 0.74 | 0.2563 |
Target: 5'- cCCGUGACCGuG-GACGGa-GGGCGGCUg -3' miRNA: 3'- -GGCGCUGGC-CgCUGCUacCCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 119970 | 0.74 | 0.2563 |
Target: 5'- gCUGUGcCCGGCGACGAgcuuccUGGcGCGGCg -3' miRNA: 3'- -GGCGCuGGCCGCUGCU------ACCcCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 40139 | 0.74 | 0.2563 |
Target: 5'- uCCGCGG-CGGCGACGGccGGccccGCGGCCc -3' miRNA: 3'- -GGCGCUgGCCGCUGCUacCC----CGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 128042 | 0.74 | 0.2563 |
Target: 5'- cCCGCGGCagCGGCGgcagcggcggcuGCGcgGGGGCGaCCg -3' miRNA: 3'- -GGCGCUG--GCCGC------------UGCuaCCCCGCcGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 127397 | 0.73 | 0.262105 |
Target: 5'- gCCGCGGCCGaGuCGACGGgagcccgcGGGGUcGCCu -3' miRNA: 3'- -GGCGCUGGC-C-GCUGCUa-------CCCCGcCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 133392 | 0.73 | 0.262105 |
Target: 5'- gCgGCGGCCGGgGcCGAgcGGGCGGUCu -3' miRNA: 3'- -GgCGCUGGCCgCuGCUacCCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 6142 | 0.73 | 0.262105 |
Target: 5'- gCCGCGGCC-GCGAgGAc--GGCGGCCu -3' miRNA: 3'- -GGCGCUGGcCGCUgCUaccCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 29597 | 0.73 | 0.262105 |
Target: 5'- gCUGCGGCC-GCGGCGGcgGGGGCuGGUg -3' miRNA: 3'- -GGCGCUGGcCGCUGCUa-CCCCG-CCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 7728 | 0.73 | 0.264457 |
Target: 5'- aCCgGCGACCGgacccgaaccgggaaGCGACGccGGGGCGGg- -3' miRNA: 3'- -GG-CGCUGGC---------------CGCUGCuaCCCCGCCgg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 85908 | 0.73 | 0.268016 |
Target: 5'- gCCGUGGCCGuGCaGuACGAggaGGGGCugGGCCu -3' miRNA: 3'- -GGCGCUGGC-CG-C-UGCUa--CCCCG--CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 91742 | 0.73 | 0.268016 |
Target: 5'- aUCGCGGCgGGCGAgCGGgcucGGGCGGgCg -3' miRNA: 3'- -GGCGCUGgCCGCU-GCUac--CCCGCCgG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 4180 | 0.73 | 0.273428 |
Target: 5'- gCGCGGCCgucaccuccucgaGGCaGGCGGgcccGaGGGCGGCCg -3' miRNA: 3'- gGCGCUGG-------------CCG-CUGCUa---C-CCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 80027 | 0.73 | 0.274035 |
Target: 5'- uCgGCGAUCGGgGACGggGGaGGCGGg- -3' miRNA: 3'- -GgCGCUGGCCgCUGCuaCC-CCGCCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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