miRNA display CGI


Results 81 - 100 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 68260 0.73 0.279544
Target:  5'- aCGCG-CgCGGCGACGGUcgcGGcgccgggcgccacGGCGGCCa -3'
miRNA:   3'- gGCGCuG-GCCGCUGCUA---CC-------------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 9618 0.73 0.280162
Target:  5'- -aGgGGCCGGCGGCGAggGGGGaaGCg -3'
miRNA:   3'- ggCgCUGGCCGCUGCUa-CCCCgcCGg -5'
29575 5' -62.9 NC_006151.1 + 27627 0.73 0.280162
Target:  5'- gCC-CGGCCGcccCGACGGgugGGGGUGGCUg -3'
miRNA:   3'- -GGcGCUGGCc--GCUGCUa--CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 118152 0.73 0.286397
Target:  5'- gCCGCGGCggUGGCGcCGcUGGuGcGCGGCCu -3'
miRNA:   3'- -GGCGCUG--GCCGCuGCuACC-C-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 107445 0.73 0.286397
Target:  5'- cCCGUGGCuggaccugcuCGGCGACGAccuGGUGGCCa -3'
miRNA:   3'- -GGCGCUG----------GCCGCUGCUaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 81496 0.73 0.292101
Target:  5'- aCGCGGCCGuCGGCGAgagcgcGGcccgcgugagcucGGCGGCCg -3'
miRNA:   3'- gGCGCUGGCcGCUGCUa-----CC-------------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 138603 0.73 0.29274
Target:  5'- aCGCGGCgcugccgcuCGGCGAgGAcgccgccgGGGGCGcGCCg -3'
miRNA:   3'- gGCGCUG---------GCCGCUgCUa-------CCCCGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 72557 0.73 0.29274
Target:  5'- gCGCGGCCGcGCGGgaGGgugGGGGCGGgUg -3'
miRNA:   3'- gGCGCUGGC-CGCUg-CUa--CCCCGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 104108 0.73 0.295309
Target:  5'- aCGCGGCCGaguucgugcgccugcGCGACGu---GGCGGCCg -3'
miRNA:   3'- gGCGCUGGC---------------CGCUGCuaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 90634 0.73 0.295309
Target:  5'- cCCGCGGgcgcUUGGCGAUGGgcguguacaugcgcGGGGCGGCg -3'
miRNA:   3'- -GGCGCU----GGCCGCUGCUa-------------CCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 5443 0.72 0.303118
Target:  5'- gCCGCGGgcgacggucucgaCGGCGACGGUGGuGGUGGa- -3'
miRNA:   3'- -GGCGCUg------------GCCGCUGCUACC-CCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 5332 0.72 0.305095
Target:  5'- gCCGCGGCC-GCGGCGGaGGGcgcccucuccggcGCGGCg -3'
miRNA:   3'- -GGCGCUGGcCGCUGCUaCCC-------------CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 89881 0.72 0.305756
Target:  5'- aCGCGccGCuCGGgcuCGGCGGUGGGGuCGGCg -3'
miRNA:   3'- gGCGC--UG-GCC---GCUGCUACCCC-GCCGg -5'
29575 5' -62.9 NC_006151.1 + 105885 0.72 0.305756
Target:  5'- gCGCGGUCGGCGACaagcuGGCGGCCa -3'
miRNA:   3'- gGCGCUGGCCGCUGcuaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 24361 0.72 0.305756
Target:  5'- aUCGCGggcucguccccGCCGGUGAuCGucuUGGGGUaGGCCa -3'
miRNA:   3'- -GGCGC-----------UGGCCGCU-GCu--ACCCCG-CCGG- -5'
29575 5' -62.9 NC_006151.1 + 96085 0.72 0.305756
Target:  5'- gCGCGGCCGGCGAagagcaUGAgcgGGGuuGCGGgCa -3'
miRNA:   3'- gGCGCUGGCCGCU------GCUa--CCC--CGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 127444 0.72 0.309746
Target:  5'- gCGCGagaGCCGGCGGCGcacgaagcgcuGGGCGGCg -3'
miRNA:   3'- gGCGC---UGGCCGCUGCuac--------CCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 75130 0.72 0.312428
Target:  5'- uCgGCGGCCGGCGGCGcgGcccagcgcGGGCGcacgggcaucauGCCg -3'
miRNA:   3'- -GgCGCUGGCCGCUGCuaC--------CCCGC------------CGG- -5'
29575 5' -62.9 NC_006151.1 + 21472 0.72 0.312428
Target:  5'- cCCGCGucGCCGGCu-CGGgcaGGCGGCCg -3'
miRNA:   3'- -GGCGC--UGGCCGcuGCUaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 123893 0.72 0.312428
Target:  5'- gCCGCGgccccGCCGuGCGGCGc---GGCGGCCg -3'
miRNA:   3'- -GGCGC-----UGGC-CGCUGCuaccCCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.