Results 61 - 80 of 390 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29575 | 5' | -62.9 | NC_006151.1 | + | 121709 | 0.67 | 0.607215 |
Target: 5'- gCgGCGGCUcGUGGCGGuccUGGGGCaGGUg -3' miRNA: 3'- -GgCGCUGGcCGCUGCU---ACCCCG-CCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 2201 | 0.67 | 0.607215 |
Target: 5'- cCCGCgGGCCGGUgggucuccacGGCGcccccGGcGGCGGCg -3' miRNA: 3'- -GGCG-CUGGCCG----------CUGCua---CC-CCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 31629 | 0.67 | 0.607215 |
Target: 5'- gCCGCG-CCGGC-ACGAgcgcacGcGGGCGcGCg -3' miRNA: 3'- -GGCGCuGGCCGcUGCUa-----C-CCCGC-CGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 66815 | 0.67 | 0.607215 |
Target: 5'- aCGaCGA-CGGCGACGAggaggaUGGGGgGGa- -3' miRNA: 3'- gGC-GCUgGCCGCUGCU------ACCCCgCCgg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 107338 | 0.67 | 0.607215 |
Target: 5'- gCCGUG-UCGGCGACGcccacccGGcccGCGGCCc -3' miRNA: 3'- -GGCGCuGGCCGCUGCua-----CCc--CGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 24885 | 0.67 | 0.607215 |
Target: 5'- gCC-CGGCCGGCGggccACGAaGacGCGGCCc -3' miRNA: 3'- -GGcGCUGGCCGC----UGCUaCccCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 57457 | 0.67 | 0.607215 |
Target: 5'- cCCGCGucgGCCaGGUGccGCGccGcGGCGGCCu -3' miRNA: 3'- -GGCGC---UGG-CCGC--UGCuaCcCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 133321 | 0.67 | 0.607215 |
Target: 5'- nCCGUGuCgaGGCG-CGcc-GGGCGGCCg -3' miRNA: 3'- -GGCGCuGg-CCGCuGCuacCCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 73208 | 0.67 | 0.606256 |
Target: 5'- cCCGCgGGCCaGGCccGCGGgcaccUGGGGCagcaucuGGCCg -3' miRNA: 3'- -GGCG-CUGG-CCGc-UGCU-----ACCCCG-------CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 141286 | 0.67 | 0.606256 |
Target: 5'- gCUGCGGuCCGaUGACGGUGGGcucguacGCGGgCg -3' miRNA: 3'- -GGCGCU-GGCcGCUGCUACCC-------CGCCgG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 38184 | 0.67 | 0.606256 |
Target: 5'- aCCGUGgcGCCGcuggugcgcuacaGCGugGAcGGGGCccgcgcccgcgaGGCCg -3' miRNA: 3'- -GGCGC--UGGC-------------CGCugCUaCCCCG------------CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 104841 | 0.67 | 0.604339 |
Target: 5'- gCCGCGGCgGaggcggaccaggccGCGGCGAcGGaGCGcGCCa -3' miRNA: 3'- -GGCGCUGgC--------------CGCUGCUaCCcCGC-CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 18807 | 0.67 | 0.598593 |
Target: 5'- aCCGUGACguacucggccgcggUGGCGACGAgcguguagucccaggUGGcgacGUGGCCg -3' miRNA: 3'- -GGCGCUG--------------GCCGCUGCU---------------ACCc---CGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 113084 | 0.67 | 0.597637 |
Target: 5'- gCGCGGCCGuCGcCGccgccaccgGGGGCggGGCCg -3' miRNA: 3'- gGCGCUGGCcGCuGCua-------CCCCG--CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 29209 | 0.67 | 0.597637 |
Target: 5'- gCGCGGCgGgGUGGgGAUGggucaccgccGGGuCGGCCg -3' miRNA: 3'- gGCGCUGgC-CGCUgCUAC----------CCC-GCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 13380 | 0.67 | 0.597637 |
Target: 5'- cCCGCGGcacccgccuCCGGgGACGcgccggccaAUGGGG-GaGCCg -3' miRNA: 3'- -GGCGCU---------GGCCgCUGC---------UACCCCgC-CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 68304 | 0.67 | 0.597637 |
Target: 5'- gCGCGcGCCcaCGACGgcGaGGGCGGCg -3' miRNA: 3'- gGCGC-UGGccGCUGCuaC-CCCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 640 | 0.67 | 0.597637 |
Target: 5'- aCGUGacGCCGGCuuCcg-GGGcGCGGCCg -3' miRNA: 3'- gGCGC--UGGCCGcuGcuaCCC-CGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 19502 | 0.67 | 0.597637 |
Target: 5'- uCCGgGGCCucGGgGACGcaGGcGCGGCCc -3' miRNA: 3'- -GGCgCUGG--CCgCUGCuaCCcCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 5915 | 0.67 | 0.597637 |
Target: 5'- gCCGgGGUCGGCGGCc--GGGGCccggagccGGCCc -3' miRNA: 3'- -GGCgCUGGCCGCUGcuaCCCCG--------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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