miRNA display CGI


Results 41 - 60 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 9618 0.73 0.280162
Target:  5'- -aGgGGCCGGCGGCGAggGGGGaaGCg -3'
miRNA:   3'- ggCgCUGGCCGCUGCUa-CCCCgcCGg -5'
29575 5' -62.9 NC_006151.1 + 10013 0.69 0.485954
Target:  5'- -aGCGG-CGGCGGCGGUcGccGCGGCCa -3'
miRNA:   3'- ggCGCUgGCCGCUGCUA-CccCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 10185 0.74 0.250601
Target:  5'- uCUGCGuucGCCGgucGCGGCGcgGGcGGCGGCUg -3'
miRNA:   3'- -GGCGC---UGGC---CGCUGCuaCC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 10435 0.68 0.528746
Target:  5'- gCCGaGGCCGGCGGgGA-GGGaggaggaggaggacGCGGCg -3'
miRNA:   3'- -GGCgCUGGCCGCUgCUaCCC--------------CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 10573 0.68 0.513093
Target:  5'- gCGCGGCCGGCu-CGgcGGccCGGCCc -3'
miRNA:   3'- gGCGCUGGCCGcuGCuaCCccGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 11033 0.71 0.354766
Target:  5'- gCCG-GGCCGGcCGGCcg-GGGGCccGGCCu -3'
miRNA:   3'- -GGCgCUGGCC-GCUGcuaCCCCG--CCGG- -5'
29575 5' -62.9 NC_006151.1 + 11708 0.69 0.442322
Target:  5'- gCGCGugCGGCGcggaACGAgagggGGGaGCGGg- -3'
miRNA:   3'- gGCGCugGCCGC----UGCUa----CCC-CGCCgg -5'
29575 5' -62.9 NC_006151.1 + 11792 0.68 0.550195
Target:  5'- gCGCGugggcgagaggGgCGGgGugGGguggGGGGCGGCg -3'
miRNA:   3'- gGCGC-----------UgGCCgCugCUa---CCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 13380 0.67 0.597637
Target:  5'- cCCGCGGcacccgccuCCGGgGACGcgccggccaAUGGGG-GaGCCg -3'
miRNA:   3'- -GGCGCU---------GGCCgCUGC---------UACCCCgC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 14029 0.68 0.553954
Target:  5'- cCCGuCGGCCcggcccccucgacggGGCGAUaaaggGGUGcGuGGCGGCCc -3'
miRNA:   3'- -GGC-GCUGG---------------CCGCUG-----CUAC-C-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 15444 0.66 0.663847
Target:  5'- uCCGCGGCuCGGUgugcgagGACGAcGGGGaGGaCg -3'
miRNA:   3'- -GGCGCUG-GCCG-------CUGCUaCCCCgCCgG- -5'
29575 5' -62.9 NC_006151.1 + 17027 0.71 0.385161
Target:  5'- gCCGgGAucCCGGCGACGAUcacguccaGGGcGuCGGCg -3'
miRNA:   3'- -GGCgCU--GGCCGCUGCUA--------CCC-C-GCCGg -5'
29575 5' -62.9 NC_006151.1 + 17113 0.78 0.126509
Target:  5'- gCCGgGGgcuCCGGCGGCGGUgcugcgGGaGGCGGCCa -3'
miRNA:   3'- -GGCgCU---GGCCGCUGCUA------CC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 17805 0.72 0.31921
Target:  5'- cCCG-GACCcccccuccuggGcGCGGCGggGcGGGCGGCCa -3'
miRNA:   3'- -GGCgCUGG-----------C-CGCUGCuaC-CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 18156 0.71 0.377403
Target:  5'- gCGgGGgCGGCGGCGGgcaugucggaaUGcGGGCgGGCCg -3'
miRNA:   3'- gGCgCUgGCCGCUGCU-----------AC-CCCG-CCGG- -5'
29575 5' -62.9 NC_006151.1 + 18746 0.67 0.588081
Target:  5'- gCCGCcGCCGGgGccccACGGggugcccGGGGCccgGGCCg -3'
miRNA:   3'- -GGCGcUGGCCgC----UGCUa------CCCCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 18807 0.67 0.598593
Target:  5'- aCCGUGACguacucggccgcggUGGCGACGAgcguguagucccaggUGGcgacGUGGCCg -3'
miRNA:   3'- -GGCGCUG--------------GCCGCUGCU---------------ACCc---CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 19292 0.79 0.114709
Target:  5'- aCCGgGGCCaGCGGCGc--GGGCGGCCg -3'
miRNA:   3'- -GGCgCUGGcCGCUGCuacCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 19416 0.76 0.1857
Target:  5'- gCgGCGACCaccgcuccggGGUGACGAU-GGGCGGCUc -3'
miRNA:   3'- -GgCGCUGG----------CCGCUGCUAcCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 19502 0.67 0.597637
Target:  5'- uCCGgGGCCucGGgGACGcaGGcGCGGCCc -3'
miRNA:   3'- -GGCgCUGG--CCgCUGCuaCCcCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.