miRNA display CGI


Results 61 - 80 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 20114 0.77 0.153538
Target:  5'- -gGCGccCCGGCGACGGggcuggGGGGCGGgCg -3'
miRNA:   3'- ggCGCu-GGCCGCUGCUa-----CCCCGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 20293 0.67 0.559605
Target:  5'- cCCGgGGCCccgGGCGcccgccgugGCGuUGGcGGCGGCg -3'
miRNA:   3'- -GGCgCUGG---CCGC---------UGCuACC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 20487 0.69 0.450874
Target:  5'- gCGCGGgggucgUCGGCGGCucuggcucGAUcgGGGGCGGCg -3'
miRNA:   3'- gGCGCU------GGCCGCUG--------CUA--CCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 20606 0.74 0.234129
Target:  5'- uCCGCGGacgaCGGCGugGGguggugGGGGC-GCCc -3'
miRNA:   3'- -GGCGCUg---GCCGCugCUa-----CCCCGcCGG- -5'
29575 5' -62.9 NC_006151.1 + 20714 0.7 0.393025
Target:  5'- cCCGCGuCCGGCGGgGccGGGcGCGagacgaacagcaGCCg -3'
miRNA:   3'- -GGCGCuGGCCGCUgCuaCCC-CGC------------CGG- -5'
29575 5' -62.9 NC_006151.1 + 20812 0.66 0.655224
Target:  5'- gCCGCGgaagGCCucguGGUGcACGcgGGGGCagaGGUCg -3'
miRNA:   3'- -GGCGC----UGG----CCGC-UGCuaCCCCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 21346 0.7 0.40906
Target:  5'- uCCGCGGCUGGaaCGGCuccgcGGGcuGCGGCCa -3'
miRNA:   3'- -GGCGCUGGCC--GCUGcua--CCC--CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 21390 0.81 0.089565
Target:  5'- aCGaCGGCCGGCGggGCGAaGGGGCGGUg -3'
miRNA:   3'- gGC-GCUGGCCGC--UGCUaCCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 21432 0.7 0.425498
Target:  5'- cUCGgGGgUcGCGGCG-UGGGGUGGCCc -3'
miRNA:   3'- -GGCgCUgGcCGCUGCuACCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 21472 0.72 0.312428
Target:  5'- cCCGCGucGCCGGCu-CGGgcaGGCGGCCg -3'
miRNA:   3'- -GGCGC--UGGCCGcuGCUaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 21538 0.69 0.485954
Target:  5'- gCCGgGGCCGG-GGCc--GGGGCcugGGCCu -3'
miRNA:   3'- -GGCgCUGGCCgCUGcuaCCCCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 21573 0.68 0.531527
Target:  5'- cCCGCcgagGGCCGcGCGGgguCGAUGGcguacggcguGGCGGCg -3'
miRNA:   3'- -GGCG----CUGGC-CGCU---GCUACC----------CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 23006 0.75 0.213592
Target:  5'- gCGCGGgUGGgGGCGcgGGGGUGGUg -3'
miRNA:   3'- gGCGCUgGCCgCUGCuaCCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 23402 0.72 0.314451
Target:  5'- cCCGCGccagcgcugguggucGCCGGCcgugggGGCGAUGggugggaGGGUGGCCc -3'
miRNA:   3'- -GGCGC---------------UGGCCG------CUGCUAC-------CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 23849 0.74 0.239516
Target:  5'- gCCGCGAgaguaguccgucCCGGUGGCGuuggcgGGGGCGaGCg -3'
miRNA:   3'- -GGCGCU------------GGCCGCUGCua----CCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 24230 0.68 0.513093
Target:  5'- aCUGCGuguaCGGCuGGCGGUGGGuccCGGCg -3'
miRNA:   3'- -GGCGCug--GCCG-CUGCUACCCc--GCCGg -5'
29575 5' -62.9 NC_006151.1 + 24361 0.72 0.305756
Target:  5'- aUCGCGggcucguccccGCCGGUGAuCGucuUGGGGUaGGCCa -3'
miRNA:   3'- -GGCGC-----------UGGCCGCU-GCu--ACCCCG-CCGG- -5'
29575 5' -62.9 NC_006151.1 + 24885 0.67 0.607215
Target:  5'- gCC-CGGCCGGCGggccACGAaGacGCGGCCc -3'
miRNA:   3'- -GGcGCUGGCCGC----UGCUaCccCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 25334 0.69 0.458648
Target:  5'- gCCGggaCGGCCGGCGugccGCGAUaucacaucggaugGGaGGCGGCg -3'
miRNA:   3'- -GGC---GCUGGCCGC----UGCUA-------------CC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 26341 0.68 0.522279
Target:  5'- cCCGCcucacgGGgCGGCGGCGGgccgcgucGGGGCGcGCg -3'
miRNA:   3'- -GGCG------CUgGCCGCUGCUa-------CCCCGC-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.