miRNA display CGI


Results 81 - 100 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 27343 0.69 0.468246
Target:  5'- cCCGgGACCGGgGuCG-UGGGccGgGGCCc -3'
miRNA:   3'- -GGCgCUGGCCgCuGCuACCC--CgCCGG- -5'
29575 5' -62.9 NC_006151.1 + 27462 0.68 0.550195
Target:  5'- uCgGgGGCgGGCGGuCGAgcggGGGGuCGGCg -3'
miRNA:   3'- -GgCgCUGgCCGCU-GCUa---CCCC-GCCGg -5'
29575 5' -62.9 NC_006151.1 + 27520 0.66 0.655224
Target:  5'- gUGCGAUgggGGCGugGggGGGGgGGg- -3'
miRNA:   3'- gGCGCUGg--CCGCugCuaCCCCgCCgg -5'
29575 5' -62.9 NC_006151.1 + 27627 0.73 0.280162
Target:  5'- gCC-CGGCCGcccCGACGGgugGGGGUGGCUg -3'
miRNA:   3'- -GGcGCUGGCc--GCUGCUa--CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 28142 0.71 0.362205
Target:  5'- uCCGCGccucucCCGGUcgauccccgucGGCGucguUGGGGCGGCg -3'
miRNA:   3'- -GGCGCu-----GGCCG-----------CUGCu---ACCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 28537 0.66 0.616809
Target:  5'- uCCGgGACCGGCca--AUGGGG-GaGCCg -3'
miRNA:   3'- -GGCgCUGGCCGcugcUACCCCgC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 28580 0.66 0.655224
Target:  5'- cCCGCauuGGCCGGCG-CGuccccGGaGGCGgguGCCg -3'
miRNA:   3'- -GGCG---CUGGCCGCuGCua---CC-CCGC---CGG- -5'
29575 5' -62.9 NC_006151.1 + 28818 0.69 0.468246
Target:  5'- uCCGgGACCGGCcaauGCGGgccccGGGGacgcgGGCCc -3'
miRNA:   3'- -GGCgCUGGCCGc---UGCUa----CCCCg----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 29209 0.67 0.597637
Target:  5'- gCGCGGCgGgGUGGgGAUGggucaccgccGGGuCGGCCg -3'
miRNA:   3'- gGCGCUGgC-CGCUgCUAC----------CCC-GCCGG- -5'
29575 5' -62.9 NC_006151.1 + 29270 0.67 0.568113
Target:  5'- cCCGgGACgGGUgagucggGAgGGUGGGGUGGg- -3'
miRNA:   3'- -GGCgCUGgCCG-------CUgCUACCCCGCCgg -5'
29575 5' -62.9 NC_006151.1 + 29410 0.72 0.326102
Target:  5'- aCCGCGcggagaagGCuCGGUGugGccgcggGGGGCGGCg -3'
miRNA:   3'- -GGCGC--------UG-GCCGCugCua----CCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 29597 0.73 0.262105
Target:  5'- gCUGCGGCC-GCGGCGGcgGGGGCuGGUg -3'
miRNA:   3'- -GGCGCUGGcCGCUGCUa-CCCCG-CCGg -5'
29575 5' -62.9 NC_006151.1 + 29971 0.71 0.362205
Target:  5'- aCCGCGGCgaUGGUGA--AUGGGcccGCGGCCu -3'
miRNA:   3'- -GGCGCUG--GCCGCUgcUACCC---CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 30577 0.67 0.611051
Target:  5'- cCCGCGGCCccgucgGGCGcagggaucguagcaaACGc--GGGCGGUCg -3'
miRNA:   3'- -GGCGCUGG------CCGC---------------UGCuacCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 30630 0.68 0.494927
Target:  5'- gCGCuGugCGG-GugGGUGGGGgaggggguugaUGGCCg -3'
miRNA:   3'- gGCG-CugGCCgCugCUACCCC-----------GCCGG- -5'
29575 5' -62.9 NC_006151.1 + 30675 0.71 0.362205
Target:  5'- uCCGgGAagccucccCCGGCgGGCGggGGGGUgucggGGCCg -3'
miRNA:   3'- -GGCgCU--------GGCCG-CUGCuaCCCCG-----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 30752 0.66 0.645628
Target:  5'- gCCGCGGgCGG-GGCG--GGGGCaGCa -3'
miRNA:   3'- -GGCGCUgGCCgCUGCuaCCCCGcCGg -5'
29575 5' -62.9 NC_006151.1 + 30865 0.66 0.645628
Target:  5'- -gGCGG-CGGCGGCGGaGGaggggggaagaGGCGGCg -3'
miRNA:   3'- ggCGCUgGCCGCUGCUaCC-----------CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 31229 0.71 0.377403
Target:  5'- cCCGgcCGGCCGGCccGGCGAgcgagcggGcGGGCGaGCCg -3'
miRNA:   3'- -GGC--GCUGGCCG--CUGCUa-------C-CCCGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 31560 0.67 0.559605
Target:  5'- gCCGCgGugC-GCGAacgugaucaCGggGGGGCGGCg -3'
miRNA:   3'- -GGCG-CugGcCGCU---------GCuaCCCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.