miRNA display CGI


Results 21 - 40 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 135483 0.66 0.616809
Target:  5'- uCCGCGcggGCCaGGCGGCGc----GCGGCCu -3'
miRNA:   3'- -GGCGC---UGG-CCGCUGCuacccCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 135102 0.74 0.244453
Target:  5'- gCCG-GGCgGGCGGCGGUagcgcgcGGGGCGGgCu -3'
miRNA:   3'- -GGCgCUGgCCGCUGCUA-------CCCCGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 134999 0.66 0.636022
Target:  5'- gCGCGuCuUGGCGggggcGCGggGGGGCagcagcggGGCCg -3'
miRNA:   3'- gGCGCuG-GCCGC-----UGCuaCCCCG--------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 134194 0.71 0.347436
Target:  5'- aCGCGAugcucgUCGcGCaGCGcgGGGGCGGUCg -3'
miRNA:   3'- gGCGCU------GGC-CGcUGCuaCCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 134091 0.74 0.2563
Target:  5'- cCCGUGACCGuG-GACGGa-GGGCGGCUg -3'
miRNA:   3'- -GGCGCUGGC-CgCUGCUacCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 133974 0.66 0.616809
Target:  5'- -aGCGGCCccucGGUggaGACGAUGGaagagagcgcGGgGGCCa -3'
miRNA:   3'- ggCGCUGG----CCG---CUGCUACC----------CCgCCGG- -5'
29575 5' -62.9 NC_006151.1 + 133632 0.7 0.408249
Target:  5'- gCgGCGGCCGG-GGCGGUGGuccgggugcgagaGGCGcuGCCg -3'
miRNA:   3'- -GgCGCUGGCCgCUGCUACC-------------CCGC--CGG- -5'
29575 5' -62.9 NC_006151.1 + 133485 0.7 0.41723
Target:  5'- gCCGCGGgcgucaccUUGGCGGCGcggGGGGCGcgggaggaGCCg -3'
miRNA:   3'- -GGCGCU--------GGCCGCUGCua-CCCCGC--------CGG- -5'
29575 5' -62.9 NC_006151.1 + 133392 0.73 0.262105
Target:  5'- gCgGCGGCCGGgGcCGAgcGGGCGGUCu -3'
miRNA:   3'- -GgCGCUGGCCgCuGCUacCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 133350 0.79 0.123458
Target:  5'- uCCGCGG-CGGCGGugguggugguggUGGUGGuGGCGGCCg -3'
miRNA:   3'- -GGCGCUgGCCGCU------------GCUACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 133321 0.67 0.607215
Target:  5'- nCCGUGuCgaGGCG-CGcc-GGGCGGCCg -3'
miRNA:   3'- -GGCGCuGg-CCGCuGCuacCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 133277 0.76 0.178824
Target:  5'- -gGCGAgCCGGCGGCGGcccacgucgagguucUccccgGGGGCGGCCc -3'
miRNA:   3'- ggCGCU-GGCCGCUGCU---------------A-----CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 133149 0.7 0.41723
Target:  5'- -aGgGACuCGGCGGCGgcGcGGGCgugGGCCu -3'
miRNA:   3'- ggCgCUG-GCCGCUGCuaC-CCCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 132835 0.69 0.485954
Target:  5'- cCCGCGGgaCGGCcACcac-GGGCGGCCg -3'
miRNA:   3'- -GGCGCUg-GCCGcUGcuacCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 131940 0.69 0.468246
Target:  5'- gCCGUaGCUGGCcacgGGCGAggGcGGGCGGCa -3'
miRNA:   3'- -GGCGcUGGCCG----CUGCUa-C-CCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 131863 0.72 0.318527
Target:  5'- aCGCGcGCCGGCGGCGuc-GGGUcgcagggcagcacGGCCg -3'
miRNA:   3'- gGCGC-UGGCCGCUGCuacCCCG-------------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 131830 0.75 0.213592
Target:  5'- -aGCGucACCguGGUGAUGAgcGGGGCGGCCg -3'
miRNA:   3'- ggCGC--UGG--CCGCUGCUa-CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 131770 0.66 0.655224
Target:  5'- gUCGCGACC-GCGGCcgc-GGGCGccGCCg -3'
miRNA:   3'- -GGCGCUGGcCGCUGcuacCCCGC--CGG- -5'
29575 5' -62.9 NC_006151.1 + 131085 0.68 0.513093
Target:  5'- gCGCGACaGGUaguccacgucGGCGG-GGGGCccGGCCg -3'
miRNA:   3'- gGCGCUGgCCG----------CUGCUaCCCCG--CCGG- -5'
29575 5' -62.9 NC_006151.1 + 130925 0.71 0.385161
Target:  5'- gCCG-GGCCcGCGGgGGcgGGGGCGGCg -3'
miRNA:   3'- -GGCgCUGGcCGCUgCUa-CCCCGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.