miRNA display CGI


Results 41 - 60 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 130875 0.83 0.064634
Target:  5'- aCCGCaguGGgCGGCGGCGGUGGaggcGGCGGCCg -3'
miRNA:   3'- -GGCG---CUgGCCGCUGCUACC----CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 130677 0.74 0.247231
Target:  5'- cCCGCGggGCgCGGCGcAgGAUguccgggggcccgacGGGGCGGCCc -3'
miRNA:   3'- -GGCGC--UG-GCCGC-UgCUA---------------CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 130112 0.66 0.626413
Target:  5'- gCCGUGAagcCCGGguucUGGCcGUGGGcGCGcGCCa -3'
miRNA:   3'- -GGCGCU---GGCC----GCUGcUACCC-CGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 129765 0.67 0.559605
Target:  5'- gCGCGAa-GGCGACGA--GGGCGucgcucccGCCg -3'
miRNA:   3'- gGCGCUggCCGCUGCUacCCCGC--------CGG- -5'
29575 5' -62.9 NC_006151.1 + 129520 0.74 0.250601
Target:  5'- gCCGCuuGCCGcCGACGggGGGGCccggGGCCg -3'
miRNA:   3'- -GGCGc-UGGCcGCUGCuaCCCCG----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 129428 0.66 0.636022
Target:  5'- gUCGaCGuCCGGCcccaaGugGgcGGGGCgcacGGCCg -3'
miRNA:   3'- -GGC-GCuGGCCG-----CugCuaCCCCG----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 129303 0.68 0.493126
Target:  5'- gCGCGGCggagcaUGGCGgaggcagagGCGGguuagcggccccGGGGCGGCCg -3'
miRNA:   3'- gGCGCUG------GCCGC---------UGCUa-----------CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 128042 0.74 0.2563
Target:  5'- cCCGCGGCagCGGCGgcagcggcggcuGCGcgGGGGCGaCCg -3'
miRNA:   3'- -GGCGCUG--GCCGC------------UGCuaCCCCGCcGG- -5'
29575 5' -62.9 NC_006151.1 + 127985 0.69 0.485954
Target:  5'- aCuCGugCGGCGgcuccgcgucGCGGUcgcGGGGCGGCg -3'
miRNA:   3'- gGcGCugGCCGC----------UGCUA---CCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 127848 0.66 0.636022
Target:  5'- gUCGCGGCU-GCGcCGGagGGGGCGccGCCc -3'
miRNA:   3'- -GGCGCUGGcCGCuGCUa-CCCCGC--CGG- -5'
29575 5' -62.9 NC_006151.1 + 127444 0.72 0.309746
Target:  5'- gCGCGagaGCCGGCGGCGcacgaagcgcuGGGCGGCg -3'
miRNA:   3'- gGCGC---UGGCCGCUGCuac--------CCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 127397 0.73 0.262105
Target:  5'- gCCGCGGCCGaGuCGACGGgagcccgcGGGGUcGCCu -3'
miRNA:   3'- -GGCGCUGGC-C-GCUGCUa-------CCCCGcCGG- -5'
29575 5' -62.9 NC_006151.1 + 127363 0.66 0.645628
Target:  5'- cUCGCccuGGgCGGgGAcCGcgGGGGUGGCg -3'
miRNA:   3'- -GGCG---CUgGCCgCU-GCuaCCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 127267 0.68 0.522279
Target:  5'- gCgGUGGCCGGUgaggucgauGACGGgucgGGGGUgcugguacaGGCCg -3'
miRNA:   3'- -GgCGCUGGCCG---------CUGCUa---CCCCG---------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 126393 0.67 0.578554
Target:  5'- cCCGCGcuGCUGGCcagccGCGucGGGGCgauGGCCa -3'
miRNA:   3'- -GGCGC--UGGCCGc----UGCuaCCCCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 125183 0.68 0.540834
Target:  5'- -aGCGccucggccucGCCGGCGuCG-UGGGccccGCGGCCc -3'
miRNA:   3'- ggCGC----------UGGCCGCuGCuACCC----CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 124123 0.72 0.333104
Target:  5'- gCCGcCGuCCGGCuccACGGUGGuGCGGCUg -3'
miRNA:   3'- -GGC-GCuGGCCGc--UGCUACCcCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 123893 0.72 0.312428
Target:  5'- gCCGCGgccccGCCGuGCGGCGc---GGCGGCCg -3'
miRNA:   3'- -GGCGC-----UGGC-CGCUGCuaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 123179 0.66 0.649468
Target:  5'- gCGUGAacguguaCGGCGACGcgcugcugcacacguAcgUGGcGGUGGCCg -3'
miRNA:   3'- gGCGCUg------GCCGCUGC---------------U--ACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 123011 0.68 0.522279
Target:  5'- gCGCGcccccGCCGGCgGACGccGUGgcguGGGCGGaCCu -3'
miRNA:   3'- gGCGC-----UGGCCG-CUGC--UAC----CCCGCC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.