miRNA display CGI


Results 61 - 80 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 122956 0.75 0.22366
Target:  5'- gCCGCGgggggcgcggacGCCGGCGACGG-GGGcGuCGGCg -3'
miRNA:   3'- -GGCGC------------UGGCCGCUGCUaCCC-C-GCCGg -5'
29575 5' -62.9 NC_006151.1 + 122748 0.67 0.59668
Target:  5'- gCGCGGCCGcGagcucgacaucauCGACGGgcugcucGuGGGCGGCUg -3'
miRNA:   3'- gGCGCUGGC-C-------------GCUGCUa------C-CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 122688 0.68 0.51676
Target:  5'- gCGCGG-CGGcCGugGAgcucgcgcucuucgGGcGGCGGCCc -3'
miRNA:   3'- gGCGCUgGCC-GCugCUa-------------CC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 122477 0.72 0.333104
Target:  5'- gCCGaGGCCGGgGACGcgGGcgagacGGCGcGCCg -3'
miRNA:   3'- -GGCgCUGGCCgCUGCuaCC------CCGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 122429 0.66 0.645628
Target:  5'- gCCGCcgaGGCCcgggaggcggaGGCGGCGuccacGGcGGCGGCg -3'
miRNA:   3'- -GGCG---CUGG-----------CCGCUGCua---CC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 121949 0.75 0.20582
Target:  5'- gCCGCcGCCGGCGACGAcgccgaggccuacuuUGagcgcaccauGGGCGGCg -3'
miRNA:   3'- -GGCGcUGGCCGCUGCU---------------AC----------CCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 121709 0.67 0.607215
Target:  5'- gCgGCGGCUcGUGGCGGuccUGGGGCaGGUg -3'
miRNA:   3'- -GgCGCUGGcCGCUGCU---ACCCCG-CCGg -5'
29575 5' -62.9 NC_006151.1 + 121638 0.7 0.393025
Target:  5'- cCCGUGGCCucucucGCGGCGGacGGGCGGgCg -3'
miRNA:   3'- -GGCGCUGGc-----CGCUGCUacCCCGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 121414 0.71 0.361456
Target:  5'- gCGCGGgCGGgGACGucgcGGGGCucgcgccGGCCu -3'
miRNA:   3'- gGCGCUgGCCgCUGCua--CCCCG-------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 121346 0.66 0.655224
Target:  5'- gCGCGACCucgagGGCcaGACGGgcgcGGacGGCGGCg -3'
miRNA:   3'- gGCGCUGG-----CCG--CUGCUa---CC--CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 121303 0.83 0.063021
Target:  5'- aCCGCGACgGGCGcuggaGCG-UGGaGGCGGCCg -3'
miRNA:   3'- -GGCGCUGgCCGC-----UGCuACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 121227 0.76 0.185263
Target:  5'- cCCGaCGACUGGCgGGCGAucgUGGacgacgaguuccuGGCGGCCg -3'
miRNA:   3'- -GGC-GCUGGCCG-CUGCU---ACC-------------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 121180 0.66 0.645628
Target:  5'- aCGCGGCCGuGCugcacGCGcucGGGGCGcGCa -3'
miRNA:   3'- gGCGCUGGC-CGc----UGCua-CCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 120958 0.66 0.664804
Target:  5'- aCCGCGucuuCCaGGCGGgGAacUGGagcgggcucaacGGCGGCa -3'
miRNA:   3'- -GGCGCu---GG-CCGCUgCU--ACC------------CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 120829 0.77 0.157263
Target:  5'- aCGCG-CCGcGCGACGAcacGuGGGUGGCCa -3'
miRNA:   3'- gGCGCuGGC-CGCUGCUa--C-CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 120741 0.7 0.425498
Target:  5'- cCCGCGGgacCCGGCcGCGucauggccUGGGuGCGGCg -3'
miRNA:   3'- -GGCGCU---GGCCGcUGCu-------ACCC-CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 119970 0.74 0.2563
Target:  5'- gCUGUGcCCGGCGACGAgcuuccUGGcGCGGCg -3'
miRNA:   3'- -GGCGCuGGCCGCUGCU------ACCcCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 119838 0.66 0.636022
Target:  5'- gCGCGACaCGGU--CGAgcaGGcGGCGGaCCg -3'
miRNA:   3'- gGCGCUG-GCCGcuGCUa--CC-CCGCC-GG- -5'
29575 5' -62.9 NC_006151.1 + 119121 0.68 0.513093
Target:  5'- gCGCGGCCGGCcuCGugGGGGC-GCUg -3'
miRNA:   3'- gGCGCUGGCCGcuGCuaCCCCGcCGG- -5'
29575 5' -62.9 NC_006151.1 + 118879 0.76 0.181376
Target:  5'- gCgGCGGCgCGGCGGCGAcgcGGccgccGGCGGCCu -3'
miRNA:   3'- -GgCGCUG-GCCGCUGCUa--CC-----CCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.