Results 41 - 60 of 390 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29575 | 5' | -62.9 | NC_006151.1 | + | 92669 | 0.66 | 0.664804 |
Target: 5'- cCUGCuGCCGGCGGCc--GGGGaCGcGCg -3' miRNA: 3'- -GGCGcUGGCCGCUGcuaCCCC-GC-CGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 100095 | 0.66 | 0.664804 |
Target: 5'- gCCgGCG-CCGGCGcCGcccucgcuGGCGGCCa -3' miRNA: 3'- -GG-CGCuGGCCGCuGCuacc----CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 103675 | 0.66 | 0.664804 |
Target: 5'- -gGCGGCgCGcGCGGCGG-GGGugcuGCGcGCCg -3' miRNA: 3'- ggCGCUG-GC-CGCUGCUaCCC----CGC-CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 117298 | 0.66 | 0.664804 |
Target: 5'- gCGCGAgcugcUCGGCGcucgccACGccGaGGGCGGCg -3' miRNA: 3'- gGCGCU-----GGCCGC------UGCuaC-CCCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 136631 | 0.66 | 0.664804 |
Target: 5'- aCG-GACCccGCGGCGcccGUGGGGCGcucGCCc -3' miRNA: 3'- gGCgCUGGc-CGCUGC---UACCCCGC---CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 28580 | 0.66 | 0.655224 |
Target: 5'- cCCGCauuGGCCGGCG-CGuccccGGaGGCGgguGCCg -3' miRNA: 3'- -GGCG---CUGGCCGCuGCua---CC-CCGC---CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 27520 | 0.66 | 0.655224 |
Target: 5'- gUGCGAUgggGGCGugGggGGGGgGGg- -3' miRNA: 3'- gGCGCUGg--CCGCugCuaCCCCgCCgg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 121180 | 0.66 | 0.645628 |
Target: 5'- aCGCGGCCGuGCugcacGCGcucGGGGCGcGCa -3' miRNA: 3'- gGCGCUGGC-CGc----UGCua-CCCCGC-CGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 96391 | 0.66 | 0.645628 |
Target: 5'- gCGCGguGCCGGCGcAC-----GGCGGCCg -3' miRNA: 3'- gGCGC--UGGCCGC-UGcuaccCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 127363 | 0.66 | 0.645628 |
Target: 5'- cUCGCccuGGgCGGgGAcCGcgGGGGUGGCg -3' miRNA: 3'- -GGCG---CUgGCCgCU-GCuaCCCCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 44025 | 0.66 | 0.645628 |
Target: 5'- cCCGCGgggaGCCGGCcgucgagaagugGAUGAgggacagGGGGaCGGUg -3' miRNA: 3'- -GGCGC----UGGCCG------------CUGCUa------CCCC-GCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 101588 | 0.66 | 0.645628 |
Target: 5'- aCGCcGCCaGCGAgcucCGGUGGGccGgGGCCu -3' miRNA: 3'- gGCGcUGGcCGCU----GCUACCC--CgCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 123179 | 0.66 | 0.649468 |
Target: 5'- gCGUGAacguguaCGGCGACGcgcugcugcacacguAcgUGGcGGUGGCCg -3' miRNA: 3'- gGCGCUg------GCCGCUGC---------------U--ACC-CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 76966 | 0.66 | 0.654265 |
Target: 5'- gCCGCGcgcgcguagaagGCCaGCG-CGGUGaggagcgccgcgaGGGUGGCCc -3' miRNA: 3'- -GGCGC------------UGGcCGCuGCUAC-------------CCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 38598 | 0.66 | 0.655224 |
Target: 5'- cCCGgGGaCGGCGAgGAggacgaGGGGCucuccggcgcGGCCc -3' miRNA: 3'- -GGCgCUgGCCGCUgCUa-----CCCCG----------CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 54918 | 0.66 | 0.655224 |
Target: 5'- gCGCGuGCaCGGCGA-GGUGcuGGCGuGCCa -3' miRNA: 3'- gGCGC-UG-GCCGCUgCUACc-CCGC-CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 85439 | 0.66 | 0.655224 |
Target: 5'- aCCGCG-CC-GCGGCcgccuuccUGGGccGCGGCCa -3' miRNA: 3'- -GGCGCuGGcCGCUGcu------ACCC--CGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 98482 | 0.66 | 0.655224 |
Target: 5'- gCCaCGACUGG-GACGA-GGGcaCGGCCc -3' miRNA: 3'- -GGcGCUGGCCgCUGCUaCCCc-GCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 131770 | 0.66 | 0.655224 |
Target: 5'- gUCGCGACC-GCGGCcgc-GGGCGccGCCg -3' miRNA: 3'- -GGCGCUGGcCGCUGcuacCCCGC--CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 20812 | 0.66 | 0.655224 |
Target: 5'- gCCGCGgaagGCCucguGGUGcACGcgGGGGCagaGGUCg -3' miRNA: 3'- -GGCGC----UGG----CCGC-UGCuaCCCCG---CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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