miRNA display CGI


Results 81 - 100 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 103225 0.66 0.638904
Target:  5'- gCGCGugCGcGCGAUGGaggaccugcugcgGcacauccgcgccauGGGCGGCCa -3'
miRNA:   3'- gGCGCugGC-CGCUGCUa------------C--------------CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 134999 0.66 0.636022
Target:  5'- gCGCGuCuUGGCGggggcGCGggGGGGCagcagcggGGCCg -3'
miRNA:   3'- gGCGCuG-GCCGC-----UGCuaCCCCG--------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 119838 0.66 0.636022
Target:  5'- gCGCGACaCGGU--CGAgcaGGcGGCGGaCCg -3'
miRNA:   3'- gGCGCUG-GCCGcuGCUa--CC-CCGCC-GG- -5'
29575 5' -62.9 NC_006151.1 + 118768 0.66 0.636022
Target:  5'- gCGCGugCGGaaccuggacGCGGUGGcGcGCGGCg -3'
miRNA:   3'- gGCGCugGCCgc-------UGCUACC-C-CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 129428 0.66 0.636022
Target:  5'- gUCGaCGuCCGGCcccaaGugGgcGGGGCgcacGGCCg -3'
miRNA:   3'- -GGC-GCuGGCCG-----CugCuaCCCCG----CCGG- -5'
29575 5' -62.9 NC_006151.1 + 127848 0.66 0.636022
Target:  5'- gUCGCGGCU-GCGcCGGagGGGGCGccGCCc -3'
miRNA:   3'- -GGCGCUGGcCGCuGCUa-CCCCGC--CGG- -5'
29575 5' -62.9 NC_006151.1 + 89838 0.66 0.636022
Target:  5'- gCUGcCGGCguaGGCGugGGUGugcGGGaCGGUCg -3'
miRNA:   3'- -GGC-GCUGg--CCGCugCUAC---CCC-GCCGG- -5'
29575 5' -62.9 NC_006151.1 + 30865 0.66 0.645628
Target:  5'- -gGCGG-CGGCGGCGGaGGaggggggaagaGGCGGCg -3'
miRNA:   3'- ggCGCUgGCCGCUGCUaCC-----------CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 30752 0.66 0.645628
Target:  5'- gCCGCGGgCGG-GGCG--GGGGCaGCa -3'
miRNA:   3'- -GGCGCUgGCCgCUGCuaCCCCGcCGg -5'
29575 5' -62.9 NC_006151.1 + 81273 0.66 0.645628
Target:  5'- -aGCGcCuCGGCGGgGAUcucGGGcGCGGCg -3'
miRNA:   3'- ggCGCuG-GCCGCUgCUA---CCC-CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 127363 0.66 0.645628
Target:  5'- cUCGCccuGGgCGGgGAcCGcgGGGGUGGCg -3'
miRNA:   3'- -GGCG---CUgGCCgCU-GCuaCCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 96391 0.66 0.645628
Target:  5'- gCGCGguGCCGGCGcAC-----GGCGGCCg -3'
miRNA:   3'- gGCGC--UGGCCGC-UGcuaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 121180 0.66 0.645628
Target:  5'- aCGCGGCCGuGCugcacGCGcucGGGGCGcGCa -3'
miRNA:   3'- gGCGCUGGC-CGc----UGCua-CCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 84624 0.66 0.645628
Target:  5'- gCGCGGCCGccGCGGCGcUGGacaacGCcauGGCCg -3'
miRNA:   3'- gGCGCUGGC--CGCUGCuACCc----CG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 59461 0.66 0.645628
Target:  5'- aCCGCGGCCgaguccaccuccGGCGAggcgcccuCGAaGagcccGGCGGCCu -3'
miRNA:   3'- -GGCGCUGG------------CCGCU--------GCUaCc----CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 55965 0.66 0.645628
Target:  5'- cCCGCGGCUGGUGuGCGA-GGuGcGCGagguGCCc -3'
miRNA:   3'- -GGCGCUGGCCGC-UGCUaCC-C-CGC----CGG- -5'
29575 5' -62.9 NC_006151.1 + 54691 0.66 0.645628
Target:  5'- gCGCGucGCCGGCaGCGugcuGGGCcagGGCCu -3'
miRNA:   3'- gGCGC--UGGCCGcUGCuac-CCCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 45309 0.66 0.645628
Target:  5'- cCCGCGagGCCGGgaGGCuGGgagGGuGGCGGUg -3'
miRNA:   3'- -GGCGC--UGGCCg-CUG-CUa--CC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 122429 0.66 0.645628
Target:  5'- gCCGCcgaGGCCcgggaggcggaGGCGGCGuccacGGcGGCGGCg -3'
miRNA:   3'- -GGCG---CUGG-----------CCGCUGCua---CC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 96206 0.66 0.645628
Target:  5'- -gGCG-CC-GCGuCGccGUGGcGGCGGCCg -3'
miRNA:   3'- ggCGCuGGcCGCuGC--UACC-CCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.