Results 101 - 120 of 390 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29575 | 5' | -62.9 | NC_006151.1 | + | 135483 | 0.66 | 0.616809 |
Target: 5'- uCCGCGcggGCCaGGCGGCGc----GCGGCCu -3' miRNA: 3'- -GGCGC---UGG-CCGCUGCuacccCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 133974 | 0.66 | 0.616809 |
Target: 5'- -aGCGGCCccucGGUggaGACGAUGGaagagagcgcGGgGGCCa -3' miRNA: 3'- ggCGCUGG----CCG---CUGCUACC----------CCgCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 90679 | 0.66 | 0.616809 |
Target: 5'- gCCGCuuguccCCcGCGGCG--GGGGCGGCg -3' miRNA: 3'- -GGCGcu----GGcCGCUGCuaCCCCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 50435 | 0.66 | 0.616809 |
Target: 5'- cCUGCGcGCCGGCGGCc-UGGGcaccgcccGCGGgCg -3' miRNA: 3'- -GGCGC-UGGCCGCUGcuACCC--------CGCCgG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 28537 | 0.66 | 0.616809 |
Target: 5'- uCCGgGACCGGCca--AUGGGG-GaGCCg -3' miRNA: 3'- -GGCgCUGGCCGcugcUACCCCgC-CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 118768 | 0.66 | 0.636022 |
Target: 5'- gCGCGugCGGaaccuggacGCGGUGGcGcGCGGCg -3' miRNA: 3'- gGCGCugGCCgc-------UGCUACC-C-CGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 119838 | 0.66 | 0.636022 |
Target: 5'- gCGCGACaCGGU--CGAgcaGGcGGCGGaCCg -3' miRNA: 3'- gGCGCUG-GCCGcuGCUa--CC-CCGCC-GG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 55965 | 0.66 | 0.645628 |
Target: 5'- cCCGCGGCUGGUGuGCGA-GGuGcGCGagguGCCc -3' miRNA: 3'- -GGCGCUGGCCGC-UGCUaCC-C-CGC----CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 54691 | 0.66 | 0.645628 |
Target: 5'- gCGCGucGCCGGCaGCGugcuGGGCcagGGCCu -3' miRNA: 3'- gGCGC--UGGCCGcUGCuac-CCCG---CCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 45309 | 0.66 | 0.645628 |
Target: 5'- cCCGCGagGCCGGgaGGCuGGgagGGuGGCGGUg -3' miRNA: 3'- -GGCGC--UGGCCg-CUG-CUa--CC-CCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 122429 | 0.66 | 0.645628 |
Target: 5'- gCCGCcgaGGCCcgggaggcggaGGCGGCGuccacGGcGGCGGCg -3' miRNA: 3'- -GGCG---CUGG-----------CCGCUGCua---CC-CCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 96206 | 0.66 | 0.645628 |
Target: 5'- -gGCG-CC-GCGuCGccGUGGcGGCGGCCg -3' miRNA: 3'- ggCGCuGGcCGCuGC--UACC-CCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 81273 | 0.66 | 0.645628 |
Target: 5'- -aGCGcCuCGGCGGgGAUcucGGGcGCGGCg -3' miRNA: 3'- ggCGCuG-GCCGCUgCUA---CCC-CGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 30752 | 0.66 | 0.645628 |
Target: 5'- gCCGCGGgCGG-GGCG--GGGGCaGCa -3' miRNA: 3'- -GGCGCUgGCCgCUGCuaCCCCGcCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 30865 | 0.66 | 0.645628 |
Target: 5'- -gGCGG-CGGCGGCGGaGGaggggggaagaGGCGGCg -3' miRNA: 3'- ggCGCUgGCCGCUGCUaCC-----------CCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 106222 | 0.66 | 0.644667 |
Target: 5'- cCC-CGACCugaugguGGCcGCGGUGGccGGCGaGCCg -3' miRNA: 3'- -GGcGCUGG-------CCGcUGCUACC--CCGC-CGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 54113 | 0.66 | 0.642747 |
Target: 5'- gCUGCGA-CGGCGGCGGcugcGGacgggcucugccccGGCGGCg -3' miRNA: 3'- -GGCGCUgGCCGCUGCUa---CC--------------CCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 90240 | 0.66 | 0.639865 |
Target: 5'- gUCGCGGCUGGCcagcgcccagcccgcGGCGAagacGGCGGCg -3' miRNA: 3'- -GGCGCUGGCCG---------------CUGCUacc-CCGCCGg -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 103225 | 0.66 | 0.638904 |
Target: 5'- gCGCGugCGcGCGAUGGaggaccugcugcgGcacauccgcgccauGGGCGGCCa -3' miRNA: 3'- gGCGCugGC-CGCUGCUa------------C--------------CCCGCCGG- -5' |
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29575 | 5' | -62.9 | NC_006151.1 | + | 134999 | 0.66 | 0.636022 |
Target: 5'- gCGCGuCuUGGCGggggcGCGggGGGGCagcagcggGGCCg -3' miRNA: 3'- gGCGCuG-GCCGC-----UGCuaCCCCG--------CCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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