miRNA display CGI


Results 21 - 40 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 104659 0.66 0.655224
Target:  5'- gCCGcCGACgCGGCgcgcgcgcucGACGAgGGGGUGcaccugcacguGCCg -3'
miRNA:   3'- -GGC-GCUG-GCCG----------CUGCUaCCCCGC-----------CGG- -5'
29575 5' -62.9 NC_006151.1 + 121346 0.66 0.655224
Target:  5'- gCGCGACCucgagGGCcaGACGGgcgcGGacGGCGGCg -3'
miRNA:   3'- gGCGCUGG-----CCG--CUGCUa---CC--CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 76966 0.66 0.654265
Target:  5'- gCCGCGcgcgcguagaagGCCaGCG-CGGUGaggagcgccgcgaGGGUGGCCc -3'
miRNA:   3'- -GGCGC------------UGGcCGCuGCUAC-------------CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 123179 0.66 0.649468
Target:  5'- gCGUGAacguguaCGGCGACGcgcugcugcacacguAcgUGGcGGUGGCCg -3'
miRNA:   3'- gGCGCUg------GCCGCUGC---------------U--ACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 45309 0.66 0.645628
Target:  5'- cCCGCGagGCCGGgaGGCuGGgagGGuGGCGGUg -3'
miRNA:   3'- -GGCGC--UGGCCg-CUG-CUa--CC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 122429 0.66 0.645628
Target:  5'- gCCGCcgaGGCCcgggaggcggaGGCGGCGuccacGGcGGCGGCg -3'
miRNA:   3'- -GGCG---CUGG-----------CCGCUGCua---CC-CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 96206 0.66 0.645628
Target:  5'- -gGCG-CC-GCGuCGccGUGGcGGCGGCCg -3'
miRNA:   3'- ggCGCuGGcCGCuGC--UACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 81273 0.66 0.645628
Target:  5'- -aGCGcCuCGGCGGgGAUcucGGGcGCGGCg -3'
miRNA:   3'- ggCGCuG-GCCGCUgCUA---CCC-CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 30752 0.66 0.645628
Target:  5'- gCCGCGGgCGG-GGCG--GGGGCaGCa -3'
miRNA:   3'- -GGCGCUgGCCgCUGCuaCCCCGcCGg -5'
29575 5' -62.9 NC_006151.1 + 30865 0.66 0.645628
Target:  5'- -gGCGG-CGGCGGCGGaGGaggggggaagaGGCGGCg -3'
miRNA:   3'- ggCGCUgGCCGCUGCUaCC-----------CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 54691 0.66 0.645628
Target:  5'- gCGCGucGCCGGCaGCGugcuGGGCcagGGCCu -3'
miRNA:   3'- gGCGC--UGGCCGcUGCuac-CCCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 55965 0.66 0.645628
Target:  5'- cCCGCGGCUGGUGuGCGA-GGuGcGCGagguGCCc -3'
miRNA:   3'- -GGCGCUGGCCGC-UGCUaCC-C-CGC----CGG- -5'
29575 5' -62.9 NC_006151.1 + 59461 0.66 0.645628
Target:  5'- aCCGCGGCCgaguccaccuccGGCGAggcgcccuCGAaGagcccGGCGGCCu -3'
miRNA:   3'- -GGCGCUGG------------CCGCU--------GCUaCc----CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 84624 0.66 0.645628
Target:  5'- gCGCGGCCGccGCGGCGcUGGacaacGCcauGGCCg -3'
miRNA:   3'- gGCGCUGGC--CGCUGCuACCc----CG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 121180 0.66 0.645628
Target:  5'- aCGCGGCCGuGCugcacGCGcucGGGGCGcGCa -3'
miRNA:   3'- gGCGCUGGC-CGc----UGCua-CCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 96391 0.66 0.645628
Target:  5'- gCGCGguGCCGGCGcAC-----GGCGGCCg -3'
miRNA:   3'- gGCGC--UGGCCGC-UGcuaccCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 127363 0.66 0.645628
Target:  5'- cUCGCccuGGgCGGgGAcCGcgGGGGUGGCg -3'
miRNA:   3'- -GGCG---CUgGCCgCU-GCuaCCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 44025 0.66 0.645628
Target:  5'- cCCGCGgggaGCCGGCcgucgagaagugGAUGAgggacagGGGGaCGGUg -3'
miRNA:   3'- -GGCGC----UGGCCG------------CUGCUa------CCCC-GCCGg -5'
29575 5' -62.9 NC_006151.1 + 101588 0.66 0.645628
Target:  5'- aCGCcGCCaGCGAgcucCGGUGGGccGgGGCCu -3'
miRNA:   3'- gGCGcUGGcCGCU----GCUACCC--CgCCGG- -5'
29575 5' -62.9 NC_006151.1 + 106222 0.66 0.644667
Target:  5'- cCC-CGACCugaugguGGCcGCGGUGGccGGCGaGCCg -3'
miRNA:   3'- -GGcGCUGG-------CCGcUGCUACC--CCGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.