miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29576 3' -65.2 NC_006151.1 + 64363 0.66 0.567245
Target:  5'- cGGCCCCCcagcgcacggucgagGCCGuGGccagcCCGCGG-CGCa- -3'
miRNA:   3'- -CCGGGGG---------------CGGC-CCa----GGCGCUaGCGcc -5'
29576 3' -65.2 NC_006151.1 + 58645 0.66 0.563518
Target:  5'- aGGCCagCGCCGGGagggCGCGG-CGCaGGg -3'
miRNA:   3'- -CCGGggGCGGCCCag--GCGCUaGCG-CC- -5'
29576 3' -65.2 NC_006151.1 + 66511 0.66 0.563518
Target:  5'- cGGaUCUUCGCCGGGcUCGCGcgCGCc- -3'
miRNA:   3'- -CC-GGGGGCGGCCCaGGCGCuaGCGcc -5'
29576 3' -65.2 NC_006151.1 + 33279 0.66 0.563518
Target:  5'- cGGCCaucgCCCGacccuuccCCGGGgCgCGCGcgCGUGGg -3'
miRNA:   3'- -CCGG----GGGC--------GGCCCaG-GCGCuaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 48580 0.66 0.563518
Target:  5'- cGGCCUgCCGCCcgGGGUgCGCcucGUCGUGc -3'
miRNA:   3'- -CCGGG-GGCGG--CCCAgGCGc--UAGCGCc -5'
29576 3' -65.2 NC_006151.1 + 55062 0.66 0.563518
Target:  5'- cGGCgaggaCCCGgCGGGcucggCCGCGG-CGCGc -3'
miRNA:   3'- -CCGg----GGGCgGCCCa----GGCGCUaGCGCc -5'
29576 3' -65.2 NC_006151.1 + 78912 0.66 0.563518
Target:  5'- cGCCCCCGUCcauucucuGUCCGCGAcaCGCa- -3'
miRNA:   3'- cCGGGGGCGGcc------CAGGCGCUa-GCGcc -5'
29576 3' -65.2 NC_006151.1 + 89156 0.66 0.563518
Target:  5'- cGCgCCCGCCucGGGcgagGCGggCGCGGg -3'
miRNA:   3'- cCGgGGGCGG--CCCagg-CGCuaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 141763 0.66 0.563518
Target:  5'- cGCCCCgguggcguCGCCGGuucuGUCC-CGGggaCGCGGg -3'
miRNA:   3'- cCGGGG--------GCGGCC----CAGGcGCUa--GCGCC- -5'
29576 3' -65.2 NC_006151.1 + 3951 0.66 0.563518
Target:  5'- gGGCUCCgCGggcCCGGG-CCGCGcg-GCGGc -3'
miRNA:   3'- -CCGGGG-GC---GGCCCaGGCGCuagCGCC- -5'
29576 3' -65.2 NC_006151.1 + 103556 0.66 0.561657
Target:  5'- gGGCagCCGCuCGGGgcgcuggucaaCGCGcUCGCGGa -3'
miRNA:   3'- -CCGggGGCG-GCCCag---------GCGCuAGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 82309 0.66 0.559798
Target:  5'- cGCCUCCGC---GUCCGCGAggacggccaccucCGCGGg -3'
miRNA:   3'- cCGGGGGCGgccCAGGCGCUa------------GCGCC- -5'
29576 3' -65.2 NC_006151.1 + 56548 0.66 0.554231
Target:  5'- gGGCCCCUGCuCGGccugCCggGCGA-CGCGc -3'
miRNA:   3'- -CCGGGGGCG-GCCca--GG--CGCUaGCGCc -5'
29576 3' -65.2 NC_006151.1 + 107702 0.66 0.554231
Target:  5'- aGCCCgCCGCCGGcaccaaggCCGC---CGCGGc -3'
miRNA:   3'- cCGGG-GGCGGCCca------GGCGcuaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 117572 0.66 0.554231
Target:  5'- gGGCuCCCCGCggaggaUGGG-CCGCGuggCGCc- -3'
miRNA:   3'- -CCG-GGGGCG------GCCCaGGCGCua-GCGcc -5'
29576 3' -65.2 NC_006151.1 + 128788 0.66 0.554231
Target:  5'- cGGCCUCgGUCGccUCgGCGAgCGCGGc -3'
miRNA:   3'- -CCGGGGgCGGCccAGgCGCUaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 141387 0.66 0.554231
Target:  5'- gGGCCCCgggcaaacagCGgCGuGUCCgGCGAUCgguGCGGg -3'
miRNA:   3'- -CCGGGG----------GCgGCcCAGG-CGCUAG---CGCC- -5'
29576 3' -65.2 NC_006151.1 + 141603 0.66 0.554231
Target:  5'- aGCCgCCCGgCGaGGcugCCGgGAUCggGCGGg -3'
miRNA:   3'- cCGG-GGGCgGC-CCa--GGCgCUAG--CGCC- -5'
29576 3' -65.2 NC_006151.1 + 5892 0.66 0.548679
Target:  5'- cGGCCUCUgccgcugcgagugcuGCCgGGGUCgGCGGcCGgGGc -3'
miRNA:   3'- -CCGGGGG---------------CGG-CCCAGgCGCUaGCgCC- -5'
29576 3' -65.2 NC_006151.1 + 83569 0.66 0.544988
Target:  5'- gGGCCCUCGaCCGcGGgCC-CGAagaGCGGg -3'
miRNA:   3'- -CCGGGGGC-GGC-CCaGGcGCUag-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.