miRNA display CGI


Results 1 - 20 of 257 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29576 3' -65.2 NC_006151.1 + 8372 0.84 0.039937
Target:  5'- aGGCCCCCGCCcccggggGGGUCCGgGAUgGgGGg -3'
miRNA:   3'- -CCGGGGGCGG-------CCCAGGCgCUAgCgCC- -5'
29576 3' -65.2 NC_006151.1 + 127310 0.8 0.07118
Target:  5'- aGGCCgucgUCCGCgCGGGUCCGCGggCGgGGg -3'
miRNA:   3'- -CCGG----GGGCG-GCCCAGGCGCuaGCgCC- -5'
29576 3' -65.2 NC_006151.1 + 82612 0.8 0.072966
Target:  5'- gGGCCCgCGCgCGGGcgCCGCGGUgggCGCGGg -3'
miRNA:   3'- -CCGGGgGCG-GCCCa-GGCGCUA---GCGCC- -5'
29576 3' -65.2 NC_006151.1 + 123014 0.8 0.076667
Target:  5'- cGCCCCCGCCGGcGgacgCCGUGG-CGUGGg -3'
miRNA:   3'- cCGGGGGCGGCC-Ca---GGCGCUaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 96863 0.79 0.082558
Target:  5'- cGCgCCCGCCGGGcgCgGCGcgCGCGGg -3'
miRNA:   3'- cCGgGGGCGGCCCa-GgCGCuaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 133459 0.78 0.095658
Target:  5'- uGGCCCCgGUCGaGGcCCGCGAggcggcCGCGGg -3'
miRNA:   3'- -CCGGGGgCGGC-CCaGGCGCUa-----GCGCC- -5'
29576 3' -65.2 NC_006151.1 + 105322 0.78 0.098024
Target:  5'- aGGCCCCCcugGCCGaGGcCCGCGcgCGCGc -3'
miRNA:   3'- -CCGGGGG---CGGC-CCaGGCGCuaGCGCc -5'
29576 3' -65.2 NC_006151.1 + 17077 0.78 0.10546
Target:  5'- gGGCCgCCGCCGGGUCagGCGcgCGCc- -3'
miRNA:   3'- -CCGGgGGCGGCCCAGg-CGCuaGCGcc -5'
29576 3' -65.2 NC_006151.1 + 84359 0.77 0.110708
Target:  5'- cGGCCCgCGgCGGuGaUCGCGAUCGCGGc -3'
miRNA:   3'- -CCGGGgGCgGCC-CaGGCGCUAGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 90089 0.77 0.113423
Target:  5'- gGGCCCCCGCCGcG-CCGCaGGcCGCGGc -3'
miRNA:   3'- -CCGGGGGCGGCcCaGGCG-CUaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 137427 0.76 0.124917
Target:  5'- cGCCgCCGCgGGGUCCGCcucCGCGGc -3'
miRNA:   3'- cCGGgGGCGgCCCAGGCGcuaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 69740 0.76 0.127648
Target:  5'- uGGCCCCCcgcggccgcgaccGCCGGGgccacgcgCCGCGcgCGCGc -3'
miRNA:   3'- -CCGGGGG-------------CGGCCCa-------GGCGCuaGCGCc -5'
29576 3' -65.2 NC_006151.1 + 81729 0.76 0.134236
Target:  5'- gGGUCCUCGCCGaaGGUCCagGCGG-CGCGGa -3'
miRNA:   3'- -CCGGGGGCGGC--CCAGG--CGCUaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 129786 0.75 0.152637
Target:  5'- cGCUCCCGCCGGcGUgggcccgcaugaggcCCGUGAgCGCGGa -3'
miRNA:   3'- cCGGGGGCGGCC-CA---------------GGCGCUaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 64180 0.75 0.166147
Target:  5'- cGCCCCCGUCGccGcCCGCGAUCGCcccGGg -3'
miRNA:   3'- cCGGGGGCGGCc-CaGGCGCUAGCG---CC- -5'
29576 3' -65.2 NC_006151.1 + 142223 0.74 0.172893
Target:  5'- cGGCucuuCCUCGCCGGGU-CGCGAcgaggcgucggucaUCGCGGc -3'
miRNA:   3'- -CCG----GGGGCGGCCCAgGCGCU--------------AGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 89721 0.74 0.174109
Target:  5'- cGGCgCCgGCCGcGG-CCGCGGUgGUGGg -3'
miRNA:   3'- -CCGgGGgCGGC-CCaGGCGCUAgCGCC- -5'
29576 3' -65.2 NC_006151.1 + 2196 0.74 0.176563
Target:  5'- aGGCCCCCGCgggccggUGGGUCUccacggcgcccccgGCGGcggCGCGGa -3'
miRNA:   3'- -CCGGGGGCG-------GCCCAGG--------------CGCUa--GCGCC- -5'
29576 3' -65.2 NC_006151.1 + 20155 0.74 0.182408
Target:  5'- cGGCgCguggaCCGCCGGG-CCGCGcccggGUCGCGGc -3'
miRNA:   3'- -CCGgG-----GGCGGCCCaGGCGC-----UAGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 65980 0.74 0.191056
Target:  5'- cGGUCCUCGCCGG--CCGCGAgCGCGu -3'
miRNA:   3'- -CCGGGGGCGGCCcaGGCGCUaGCGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.