miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29576 3' -65.2 NC_006151.1 + 39984 0.66 0.544988
Target:  5'- gGGCgCCCCGCCGG--CCGUGcUC-UGGg -3'
miRNA:   3'- -CCG-GGGGCGGCCcaGGCGCuAGcGCC- -5'
29576 3' -65.2 NC_006151.1 + 83422 0.66 0.544988
Target:  5'- aGGUUgCCGCCGGGgggcUCCcCGGgcagCGUGGc -3'
miRNA:   3'- -CCGGgGGCGGCCC----AGGcGCUa---GCGCC- -5'
29576 3' -65.2 NC_006151.1 + 83569 0.66 0.544988
Target:  5'- gGGCCCUCGaCCGcGGgCC-CGAagaGCGGg -3'
miRNA:   3'- -CCGGGGGC-GGC-CCaGGcGCUag-CGCC- -5'
29576 3' -65.2 NC_006151.1 + 5631 0.66 0.544988
Target:  5'- cGCCgCCGCCGGGcgCCgagaccggcccgGCGG-CGgGGg -3'
miRNA:   3'- cCGGgGGCGGCCCa-GG------------CGCUaGCgCC- -5'
29576 3' -65.2 NC_006151.1 + 32940 0.66 0.542225
Target:  5'- cGCUCCCGCCuGuGGUgccguguuuuuuucCCGCGA-CGgGGa -3'
miRNA:   3'- cCGGGGGCGG-C-CCA--------------GGCGCUaGCgCC- -5'
29576 3' -65.2 NC_006151.1 + 32557 0.66 0.535797
Target:  5'- cGCUCCCGucucCCGGGcacCCGCGGccggGCGGa -3'
miRNA:   3'- cCGGGGGC----GGCCCa--GGCGCUag--CGCC- -5'
29576 3' -65.2 NC_006151.1 + 51296 0.66 0.535797
Target:  5'- gGGCCgCCgGCCaGGUCCGCGcgaacaCGUa- -3'
miRNA:   3'- -CCGG-GGgCGGcCCAGGCGCua----GCGcc -5'
29576 3' -65.2 NC_006151.1 + 126390 0.66 0.535797
Target:  5'- gGGCCCgCGCUGcuGGccagCCGCG-UCGgGGc -3'
miRNA:   3'- -CCGGGgGCGGC--CCa---GGCGCuAGCgCC- -5'
29576 3' -65.2 NC_006151.1 + 127995 0.66 0.535797
Target:  5'- cGGCUCCgCGUCGcGGU-CGCGGg-GCGGc -3'
miRNA:   3'- -CCGGGG-GCGGC-CCAgGCGCUagCGCC- -5'
29576 3' -65.2 NC_006151.1 + 137297 0.66 0.535797
Target:  5'- cGGCCa-UGCgCGGGuUCCGCcg-CGCGGu -3'
miRNA:   3'- -CCGGggGCG-GCCC-AGGCGcuaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 127565 0.66 0.534881
Target:  5'- uGGCCgCCGCCGGcgccucguucgccGUCCcCG-UCGgGGu -3'
miRNA:   3'- -CCGGgGGCGGCC-------------CAGGcGCuAGCgCC- -5'
29576 3' -65.2 NC_006151.1 + 62270 0.66 0.52666
Target:  5'- -uCCCCaCGCCGGccuUCUGCGugcUCGUGGc -3'
miRNA:   3'- ccGGGG-GCGGCCc--AGGCGCu--AGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 35973 0.66 0.52666
Target:  5'- cGGCCgCCGCCGcGG-CCGaggaaGAgggcaUCGCGu -3'
miRNA:   3'- -CCGGgGGCGGC-CCaGGCg----CU-----AGCGCc -5'
29576 3' -65.2 NC_006151.1 + 99537 0.66 0.52666
Target:  5'- cGCgCCCGCCcacggagcacguGGGcgCgGCGcgCGCGGc -3'
miRNA:   3'- cCGgGGGCGG------------CCCa-GgCGCuaGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 68128 0.66 0.525749
Target:  5'- aGCUCgCCGCCGcucccgcGGagCGUGGUCGUGGu -3'
miRNA:   3'- cCGGG-GGCGGC-------CCagGCGCUAGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 32765 0.66 0.521206
Target:  5'- cGCCCCgcucucccaCGCCGcGG-CCGCGGggggccgaagcggaCGCGGa -3'
miRNA:   3'- cCGGGG---------GCGGC-CCaGGCGCUa-------------GCGCC- -5'
29576 3' -65.2 NC_006151.1 + 8227 0.66 0.521206
Target:  5'- gGGUCCCCuucccggcggggaggGCCGGGcCgGCGcgC-CGGg -3'
miRNA:   3'- -CCGGGGG---------------CGGCCCaGgCGCuaGcGCC- -5'
29576 3' -65.2 NC_006151.1 + 117277 0.66 0.517582
Target:  5'- cGGCCgCCGCCGacagCGCGcgCGCGa -3'
miRNA:   3'- -CCGGgGGCGGCccagGCGCuaGCGCc -5'
29576 3' -65.2 NC_006151.1 + 115190 0.66 0.517582
Target:  5'- cGCUCCagccagcgCGCCGcGGgcgcgCgCGCGAUCGUGGc -3'
miRNA:   3'- cCGGGG--------GCGGC-CCa----G-GCGCUAGCGCC- -5'
29576 3' -65.2 NC_006151.1 + 108130 0.66 0.517582
Target:  5'- aGCCCCCGUCGucccaaccGG-CCGCcaagcCGCGGg -3'
miRNA:   3'- cCGGGGGCGGC--------CCaGGCGcua--GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.