miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29576 5' -55.3 NC_006151.1 + 131871 0.66 0.933721
Target:  5'- cGGCGGCGUcgggUCGCaGGGCAgcacggCCGagggCGa -3'
miRNA:   3'- -CCGCCGCA----AGUG-CUCGUa-----GGCgua-GU- -5'
29576 5' -55.3 NC_006151.1 + 71091 0.66 0.933721
Target:  5'- cGGCGccGCGggCGCGGGCG-CCGUg--- -3'
miRNA:   3'- -CCGC--CGCaaGUGCUCGUaGGCGuagu -5'
29576 5' -55.3 NC_006151.1 + 11881 0.66 0.933721
Target:  5'- cGCGGCGaUUCGgGccGCAUCgaggCGCGUCGg -3'
miRNA:   3'- cCGCCGC-AAGUgCu-CGUAG----GCGUAGU- -5'
29576 5' -55.3 NC_006151.1 + 89129 0.66 0.933721
Target:  5'- gGGCGGCGggacCGgGGGCGUcgagaccgcgcCCGCcUCGg -3'
miRNA:   3'- -CCGCCGCaa--GUgCUCGUA-----------GGCGuAGU- -5'
29576 5' -55.3 NC_006151.1 + 73384 0.66 0.933721
Target:  5'- cGGgGGCGcgcagCGCG-GCcgCCGCGUa- -3'
miRNA:   3'- -CCgCCGCaa---GUGCuCGuaGGCGUAgu -5'
29576 5' -55.3 NC_006151.1 + 50093 0.66 0.933721
Target:  5'- cGGCGcGCGUaCGCGAucaGCuccgGUCCGCGg-- -3'
miRNA:   3'- -CCGC-CGCAaGUGCU---CG----UAGGCGUagu -5'
29576 5' -55.3 NC_006151.1 + 2499 0.66 0.933721
Target:  5'- aGGCGGCGccCGCGucaaaGUCCGgGUCc -3'
miRNA:   3'- -CCGCCGCaaGUGCucg--UAGGCgUAGu -5'
29576 5' -55.3 NC_006151.1 + 52228 0.66 0.928569
Target:  5'- cGGuCGGCGaa---GAGCGUCUugaGCAUCAg -3'
miRNA:   3'- -CC-GCCGCaagugCUCGUAGG---CGUAGU- -5'
29576 5' -55.3 NC_006151.1 + 103674 0.66 0.928569
Target:  5'- aGGCGGCGcgCGCG-GCGggggugCUGCGc-- -3'
miRNA:   3'- -CCGCCGCaaGUGCuCGUa-----GGCGUagu -5'
29576 5' -55.3 NC_006151.1 + 104406 0.66 0.928569
Target:  5'- cGGCGGCGUgCugGcccGCG-CCGCcgCc -3'
miRNA:   3'- -CCGCCGCAaGugCu--CGUaGGCGuaGu -5'
29576 5' -55.3 NC_006151.1 + 131778 0.66 0.928569
Target:  5'- cGCGGC---CGCGGGCGccgCCGuCGUCAg -3'
miRNA:   3'- cCGCCGcaaGUGCUCGUa--GGC-GUAGU- -5'
29576 5' -55.3 NC_006151.1 + 4039 0.66 0.923174
Target:  5'- aGGCGGCc-UCGCGGGCGcgggCCcCGUCc -3'
miRNA:   3'- -CCGCCGcaAGUGCUCGUa---GGcGUAGu -5'
29576 5' -55.3 NC_006151.1 + 135345 0.66 0.923174
Target:  5'- aGGCacGUGUcCGCGAGCcgCCGCGc-- -3'
miRNA:   3'- -CCGc-CGCAaGUGCUCGuaGGCGUagu -5'
29576 5' -55.3 NC_006151.1 + 64290 0.66 0.923174
Target:  5'- aGCGccGCGUUguCGGGCGUgCCGCAg-- -3'
miRNA:   3'- cCGC--CGCAAguGCUCGUA-GGCGUagu -5'
29576 5' -55.3 NC_006151.1 + 133390 0.66 0.920949
Target:  5'- gGGCGGCGgccggggccgaGCGGGCGgucuuggCCGCGg-- -3'
miRNA:   3'- -CCGCCGCaag--------UGCUCGUa------GGCGUagu -5'
29576 5' -55.3 NC_006151.1 + 43006 0.66 0.917538
Target:  5'- gGGCGGCGggCGCuuGGCAccccUCCaCAUCu -3'
miRNA:   3'- -CCGCCGCaaGUGc-UCGU----AGGcGUAGu -5'
29576 5' -55.3 NC_006151.1 + 19444 0.66 0.917538
Target:  5'- gGGCGGCucgcgCugGAGCcgCgGCAccUCGg -3'
miRNA:   3'- -CCGCCGcaa--GugCUCGuaGgCGU--AGU- -5'
29576 5' -55.3 NC_006151.1 + 76812 0.66 0.917538
Target:  5'- cGGCgagGGCGggCGCGuaguGGCGgcCCGCGUCc -3'
miRNA:   3'- -CCG---CCGCaaGUGC----UCGUa-GGCGUAGu -5'
29576 5' -55.3 NC_006151.1 + 97288 0.66 0.917538
Target:  5'- cGGCGGCGggCGuguUGAGCcggCC-CGUCGg -3'
miRNA:   3'- -CCGCCGCaaGU---GCUCGua-GGcGUAGU- -5'
29576 5' -55.3 NC_006151.1 + 22284 0.66 0.917538
Target:  5'- aGGuCGGCGcgggCACG-GCGUCCaCGUCc -3'
miRNA:   3'- -CC-GCCGCaa--GUGCuCGUAGGcGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.