miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29577 3' -59.3 NC_006151.1 + 142093 0.66 0.770643
Target:  5'- aCgC-CCG-CAGgACCUGC-GCGGGCUg -3'
miRNA:   3'- -GgGaGGCaGUCgUGGACGuCGCUCGA- -5'
29577 3' -59.3 NC_006151.1 + 106929 0.66 0.770643
Target:  5'- gUCCacggaCC-UCAGCuCCUGgGGCGAGCg -3'
miRNA:   3'- -GGGa----GGcAGUCGuGGACgUCGCUCGa -5'
29577 3' -59.3 NC_006151.1 + 128779 0.66 0.770643
Target:  5'- aCCgCUCCacggccUCGGuCGCCU-CGGCGAGCg -3'
miRNA:   3'- -GG-GAGGc-----AGUC-GUGGAcGUCGCUCGa -5'
29577 3' -59.3 NC_006151.1 + 18537 0.66 0.770643
Target:  5'- gCCCg-CGUCGGCACCcggaacgGCcGCGAGg- -3'
miRNA:   3'- -GGGagGCAGUCGUGGa------CGuCGCUCga -5'
29577 3' -59.3 NC_006151.1 + 66778 0.66 0.770643
Target:  5'- gCCCUCgGgacggCGGCGgCgGCGGCGGGg- -3'
miRNA:   3'- -GGGAGgCa----GUCGUgGaCGUCGCUCga -5'
29577 3' -59.3 NC_006151.1 + 70705 0.66 0.770643
Target:  5'- cCCCUCC-UCGGUggccaaccgccGCCUGCuGGCcGGCa -3'
miRNA:   3'- -GGGAGGcAGUCG-----------UGGACG-UCGcUCGa -5'
29577 3' -59.3 NC_006151.1 + 101847 0.66 0.770643
Target:  5'- gCCC-CCGcccCGGCACCcgGCGGCGcaccGCUc -3'
miRNA:   3'- -GGGaGGCa--GUCGUGGa-CGUCGCu---CGA- -5'
29577 3' -59.3 NC_006151.1 + 118928 0.66 0.770643
Target:  5'- gCgUCCGUCaugAGCGCCgacGCGGCGcugucGCUg -3'
miRNA:   3'- gGgAGGCAG---UCGUGGa--CGUCGCu----CGA- -5'
29577 3' -59.3 NC_006151.1 + 129684 0.66 0.765068
Target:  5'- aCCgUCCGgccgccguggaccgCGGCGCCgagcagGCAGuUGAGCa -3'
miRNA:   3'- -GGgAGGCa-------------GUCGUGGa-----CGUC-GCUCGa -5'
29577 3' -59.3 NC_006151.1 + 47285 0.66 0.761328
Target:  5'- gCgUCCG-CGGCugCUGUgaugGGUGGGCg -3'
miRNA:   3'- gGgAGGCaGUCGugGACG----UCGCUCGa -5'
29577 3' -59.3 NC_006151.1 + 24912 0.66 0.761328
Target:  5'- gCCCUCCG--AGCccgaCUGCAG-GGGCUg -3'
miRNA:   3'- -GGGAGGCagUCGug--GACGUCgCUCGA- -5'
29577 3' -59.3 NC_006151.1 + 52080 0.66 0.761328
Target:  5'- gCUgUCCGUCugcAGCGCCgucgagaGCAGCGcGCc -3'
miRNA:   3'- -GGgAGGCAG---UCGUGGa------CGUCGCuCGa -5'
29577 3' -59.3 NC_006151.1 + 78267 0.66 0.761328
Target:  5'- aUCCUggcCCGcUGGCACCUGC--CGAGCUg -3'
miRNA:   3'- -GGGA---GGCaGUCGUGGACGucGCUCGA- -5'
29577 3' -59.3 NC_006151.1 + 17814 0.66 0.751901
Target:  5'- cCCCUCC-UgGGCGCg-GCggGGCGGGCg -3'
miRNA:   3'- -GGGAGGcAgUCGUGgaCG--UCGCUCGa -5'
29577 3' -59.3 NC_006151.1 + 104259 0.66 0.751901
Target:  5'- gCCCgagaaCGcCGGCGCg-GCGGCGGGCc -3'
miRNA:   3'- -GGGag---GCaGUCGUGgaCGUCGCUCGa -5'
29577 3' -59.3 NC_006151.1 + 100300 0.66 0.751901
Target:  5'- gCCUCCGUCuucGCGCCcgggGagGGUGGGCc -3'
miRNA:   3'- gGGAGGCAGu--CGUGGa---Cg-UCGCUCGa -5'
29577 3' -59.3 NC_006151.1 + 58070 0.66 0.742372
Target:  5'- gUCCU-CGUCcGCGCCcucGCGGgCGAGCUc -3'
miRNA:   3'- -GGGAgGCAGuCGUGGa--CGUC-GCUCGA- -5'
29577 3' -59.3 NC_006151.1 + 37167 0.66 0.742372
Target:  5'- gUCUCCGcCGGCGCCcGCcGCG-GCc -3'
miRNA:   3'- gGGAGGCaGUCGUGGaCGuCGCuCGa -5'
29577 3' -59.3 NC_006151.1 + 70068 0.66 0.742372
Target:  5'- gCCCgagCCGUggUAGCGCguCUGCGcGUGGGCg -3'
miRNA:   3'- -GGGa--GGCA--GUCGUG--GACGU-CGCUCGa -5'
29577 3' -59.3 NC_006151.1 + 137641 0.66 0.742372
Target:  5'- gCCCU-CGUCcGCGCCcccgucccgGCGGaCGAGCg -3'
miRNA:   3'- -GGGAgGCAGuCGUGGa--------CGUC-GCUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.