miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29577 5' -57.2 NC_006151.1 + 70141 0.66 0.856928
Target:  5'- aGGGGGUccgggacgaugacguGCaCgaGCGCgGGCGCGAAGc -3'
miRNA:   3'- -UCUCCA---------------UGcGgaCGUGgUCGCGCUUC- -5'
29577 5' -57.2 NC_006151.1 + 137112 0.66 0.853808
Target:  5'- cGGGG-ACGCCUggggGCGCgcgaCGGCGCGGc- -3'
miRNA:   3'- uCUCCaUGCGGA----CGUG----GUCGCGCUuc -5'
29577 5' -57.2 NC_006151.1 + 99703 0.66 0.853808
Target:  5'- cGGGGagACGCCcauggagGCGCCgacgAGCGCGGc- -3'
miRNA:   3'- uCUCCa-UGCGGa------CGUGG----UCGCGCUuc -5'
29577 5' -57.2 NC_006151.1 + 56342 0.66 0.853808
Target:  5'- uGGAGcGcgcgcGCGCCc-CGCCGGCGCGGAa -3'
miRNA:   3'- -UCUC-Ca----UGCGGacGUGGUCGCGCUUc -5'
29577 5' -57.2 NC_006151.1 + 17554 0.66 0.853808
Target:  5'- -cGGGUGCGCCUcGC-CCAcGaagGCGggGa -3'
miRNA:   3'- ucUCCAUGCGGA-CGuGGU-Cg--CGCuuC- -5'
29577 5' -57.2 NC_006151.1 + 43796 0.66 0.853023
Target:  5'- gAGGGGUuggguacccacccGCuGCCaaGCAgCAGCGUGAGGc -3'
miRNA:   3'- -UCUCCA-------------UG-CGGa-CGUgGUCGCGCUUC- -5'
29577 5' -57.2 NC_006151.1 + 70784 0.66 0.845867
Target:  5'- -----cGCGCCUccgGCACCGGCGUGGc- -3'
miRNA:   3'- ucuccaUGCGGA---CGUGGUCGCGCUuc -5'
29577 5' -57.2 NC_006151.1 + 91548 0.66 0.845867
Target:  5'- cGAGGUGCGCg---GCCAGCGgGgcGa -3'
miRNA:   3'- uCUCCAUGCGgacgUGGUCGCgCuuC- -5'
29577 5' -57.2 NC_006151.1 + 68718 0.66 0.845867
Target:  5'- aAGAGGaaaACGCC-GC-CCAGCaGCGGGc -3'
miRNA:   3'- -UCUCCa--UGCGGaCGuGGUCG-CGCUUc -5'
29577 5' -57.2 NC_006151.1 + 82424 0.66 0.845867
Target:  5'- gAGAGGcgcggGCGCUcGCGCgGGCGCu--- -3'
miRNA:   3'- -UCUCCa----UGCGGaCGUGgUCGCGcuuc -5'
29577 5' -57.2 NC_006151.1 + 83105 0.66 0.845867
Target:  5'- cGAGcGgGCGCCcGCGCCGGuCGCaGAGc -3'
miRNA:   3'- uCUC-CaUGCGGaCGUGGUC-GCGcUUC- -5'
29577 5' -57.2 NC_006151.1 + 141853 0.66 0.845867
Target:  5'- cGAGGggcucGCGCC-GCGCCcucuGGUGcCGGAGg -3'
miRNA:   3'- uCUCCa----UGCGGaCGUGG----UCGC-GCUUC- -5'
29577 5' -57.2 NC_006151.1 + 34605 0.66 0.845867
Target:  5'- cGGAGcGcGCGCCgaGCGCgaGGCGCGGGu -3'
miRNA:   3'- -UCUC-CaUGCGGa-CGUGg-UCGCGCUUc -5'
29577 5' -57.2 NC_006151.1 + 130290 0.66 0.83773
Target:  5'- cGGGcGcGCGCCgGCcgaCGGCGCGGAGc -3'
miRNA:   3'- uCUC-CaUGCGGaCGug-GUCGCGCUUC- -5'
29577 5' -57.2 NC_006151.1 + 113028 0.66 0.83773
Target:  5'- cGAcGcGUGCGCCgggUGCugCgcggcggcggAGCGCGAGGa -3'
miRNA:   3'- uCU-C-CAUGCGG---ACGugG----------UCGCGCUUC- -5'
29577 5' -57.2 NC_006151.1 + 8504 0.66 0.829406
Target:  5'- gGGAGGguguCGUCUGUGugucUguGCGCGggGa -3'
miRNA:   3'- -UCUCCau--GCGGACGU----GguCGCGCuuC- -5'
29577 5' -57.2 NC_006151.1 + 89041 0.66 0.829406
Target:  5'- cGA--UGCGCUUGCGCCcguGCGCGGu- -3'
miRNA:   3'- uCUccAUGCGGACGUGGu--CGCGCUuc -5'
29577 5' -57.2 NC_006151.1 + 100888 0.66 0.829406
Target:  5'- uGGAGGUgcuGCGCCgcgGCGCgC-GCGCGc-- -3'
miRNA:   3'- -UCUCCA---UGCGGa--CGUG-GuCGCGCuuc -5'
29577 5' -57.2 NC_006151.1 + 90802 0.66 0.829406
Target:  5'- aGGuGGU-CGCCcGCACCGGC-CGcAGg -3'
miRNA:   3'- -UCuCCAuGCGGaCGUGGUCGcGCuUC- -5'
29577 5' -57.2 NC_006151.1 + 102334 0.66 0.829406
Target:  5'- cGGAGGcgcGCGCgCUGCuggacgugGCCGGCGaCGAc- -3'
miRNA:   3'- -UCUCCa--UGCG-GACG--------UGGUCGC-GCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.