miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29578 5' -56.4 NC_006151.1 + 127476 0.66 0.876241
Target:  5'- cGGCGcGGAACgAGCcgcggACCCCgcgccggaagCUGGUGCGc -3'
miRNA:   3'- -CUGCaUCUUG-UCG-----UGGGG----------GACCACGU- -5'
29578 5' -56.4 NC_006151.1 + 39933 0.66 0.876241
Target:  5'- cGACGccGA--GGcCGCCCCgCUGGUGCu -3'
miRNA:   3'- -CUGCauCUugUC-GUGGGG-GACCACGu -5'
29578 5' -56.4 NC_006151.1 + 31730 0.66 0.876241
Target:  5'- gGGCGUGGAGaGGCGCCCgCgccgGGgacGCGc -3'
miRNA:   3'- -CUGCAUCUUgUCGUGGGgGa---CCa--CGU- -5'
29578 5' -56.4 NC_006151.1 + 131907 0.66 0.868855
Target:  5'- cGACG-GGGGCGGCagcaggGCCUCCgcGGUGCu -3'
miRNA:   3'- -CUGCaUCUUGUCG------UGGGGGa-CCACGu -5'
29578 5' -56.4 NC_006151.1 + 5340 0.66 0.861252
Target:  5'- cGCGgcGGAgGGCGCCCUCUccGGcGCGg -3'
miRNA:   3'- cUGCauCUUgUCGUGGGGGA--CCaCGU- -5'
29578 5' -56.4 NC_006151.1 + 2211 0.66 0.853437
Target:  5'- --gGUGGGucuccACGGCGCCCCC-GGcgGCGg -3'
miRNA:   3'- cugCAUCU-----UGUCGUGGGGGaCCa-CGU- -5'
29578 5' -56.4 NC_006151.1 + 121320 0.66 0.853437
Target:  5'- aGCGUGGAgGCGGcCGCCgagCUGGUGCGc -3'
miRNA:   3'- cUGCAUCU-UGUC-GUGGgg-GACCACGU- -5'
29578 5' -56.4 NC_006151.1 + 81631 0.66 0.845418
Target:  5'- cGGCGaAGAAgAGCGCCUgCUGGU-CGa -3'
miRNA:   3'- -CUGCaUCUUgUCGUGGGgGACCAcGU- -5'
29578 5' -56.4 NC_006151.1 + 2672 0.66 0.845418
Target:  5'- uGGCGgcagAGGcgcaGCGGCucgGCCCCggGGUGCAg -3'
miRNA:   3'- -CUGCa---UCU----UGUCG---UGGGGgaCCACGU- -5'
29578 5' -56.4 NC_006151.1 + 97487 0.67 0.8372
Target:  5'- cACGUGGAcgcGCAGCGCCUCgCggcGGUgGCGc -3'
miRNA:   3'- cUGCAUCU---UGUCGUGGGG-Ga--CCA-CGU- -5'
29578 5' -56.4 NC_006151.1 + 50020 0.67 0.8372
Target:  5'- cGCGgcccGcGCGGCGCCCCCgGGcGCGg -3'
miRNA:   3'- cUGCau--CuUGUCGUGGGGGaCCaCGU- -5'
29578 5' -56.4 NC_006151.1 + 18298 0.67 0.836368
Target:  5'- aGACGUcgaagccGGAGCggGGCGCCUCCUcGGgGCGc -3'
miRNA:   3'- -CUGCA-------UCUUG--UCGUGGGGGA-CCaCGU- -5'
29578 5' -56.4 NC_006151.1 + 101704 0.67 0.820201
Target:  5'- uACGUGGAgcggGCGGUGCCCUCc-GUGCAc -3'
miRNA:   3'- cUGCAUCU----UGUCGUGGGGGacCACGU- -5'
29578 5' -56.4 NC_006151.1 + 142009 0.68 0.784173
Target:  5'- cGGCGUGGGGCggguguGGCACCa-CgugGGUGCAu -3'
miRNA:   3'- -CUGCAUCUUG------UCGUGGggGa--CCACGU- -5'
29578 5' -56.4 NC_006151.1 + 77857 0.68 0.783241
Target:  5'- uGACGgagGGGcucuuugACGGCAUCCCCgGcGUGCGc -3'
miRNA:   3'- -CUGCa--UCU-------UGUCGUGGGGGaC-CACGU- -5'
29578 5' -56.4 NC_006151.1 + 103318 0.68 0.774794
Target:  5'- cGACGccGAGCuGCGCaCgCUGGUGCAg -3'
miRNA:   3'- -CUGCauCUUGuCGUGgGgGACCACGU- -5'
29578 5' -56.4 NC_006151.1 + 74277 0.68 0.755656
Target:  5'- cGGCGUAGuaguagaucuugGACAGCACCgaCCacucggcgucgUGGUGCGg -3'
miRNA:   3'- -CUGCAUC------------UUGUCGUGGg-GG-----------ACCACGU- -5'
29578 5' -56.4 NC_006151.1 + 4989 0.68 0.745914
Target:  5'- -uUGUGGAGCGGCGCUUCCUGc-GCGg -3'
miRNA:   3'- cuGCAUCUUGUCGUGGGGGACcaCGU- -5'
29578 5' -56.4 NC_006151.1 + 49690 0.68 0.736071
Target:  5'- gGACGcgcccccggAGAGC-GCACCCCCUccccgggagggGGUGCu -3'
miRNA:   3'- -CUGCa--------UCUUGuCGUGGGGGA-----------CCACGu -5'
29578 5' -56.4 NC_006151.1 + 21970 0.69 0.726135
Target:  5'- cGGCGUGGugcggcgccGGCAGCGCCCaaagaucugCCUGGggucGCAg -3'
miRNA:   3'- -CUGCAUC---------UUGUCGUGGG---------GGACCa---CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.