Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29578 | 5' | -56.4 | NC_006151.1 | + | 127476 | 0.66 | 0.876241 |
Target: 5'- cGGCGcGGAACgAGCcgcggACCCCgcgccggaagCUGGUGCGc -3' miRNA: 3'- -CUGCaUCUUG-UCG-----UGGGG----------GACCACGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 2672 | 0.66 | 0.845418 |
Target: 5'- uGGCGgcagAGGcgcaGCGGCucgGCCCCggGGUGCAg -3' miRNA: 3'- -CUGCa---UCU----UGUCG---UGGGGgaCCACGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 81631 | 0.66 | 0.845418 |
Target: 5'- cGGCGaAGAAgAGCGCCUgCUGGU-CGa -3' miRNA: 3'- -CUGCaUCUUgUCGUGGGgGACCAcGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 2211 | 0.66 | 0.853437 |
Target: 5'- --gGUGGGucuccACGGCGCCCCC-GGcgGCGg -3' miRNA: 3'- cugCAUCU-----UGUCGUGGGGGaCCa-CGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 121320 | 0.66 | 0.853437 |
Target: 5'- aGCGUGGAgGCGGcCGCCgagCUGGUGCGc -3' miRNA: 3'- cUGCAUCU-UGUC-GUGGgg-GACCACGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 5340 | 0.66 | 0.861252 |
Target: 5'- cGCGgcGGAgGGCGCCCUCUccGGcGCGg -3' miRNA: 3'- cUGCauCUUgUCGUGGGGGA--CCaCGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 131907 | 0.66 | 0.868855 |
Target: 5'- cGACG-GGGGCGGCagcaggGCCUCCgcGGUGCu -3' miRNA: 3'- -CUGCaUCUUGUCG------UGGGGGa-CCACGu -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 31730 | 0.66 | 0.876241 |
Target: 5'- gGGCGUGGAGaGGCGCCCgCgccgGGgacGCGc -3' miRNA: 3'- -CUGCAUCUUgUCGUGGGgGa---CCa--CGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 39933 | 0.66 | 0.876241 |
Target: 5'- cGACGccGA--GGcCGCCCCgCUGGUGCu -3' miRNA: 3'- -CUGCauCUugUC-GUGGGG-GACCACGu -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 101704 | 0.67 | 0.820201 |
Target: 5'- uACGUGGAgcggGCGGUGCCCUCc-GUGCAc -3' miRNA: 3'- cUGCAUCU----UGUCGUGGGGGacCACGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 18298 | 0.67 | 0.836368 |
Target: 5'- aGACGUcgaagccGGAGCggGGCGCCUCCUcGGgGCGc -3' miRNA: 3'- -CUGCA-------UCUUG--UCGUGGGGGA-CCaCGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 97487 | 0.67 | 0.8372 |
Target: 5'- cACGUGGAcgcGCAGCGCCUCgCggcGGUgGCGc -3' miRNA: 3'- cUGCAUCU---UGUCGUGGGG-Ga--CCA-CGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 50020 | 0.67 | 0.8372 |
Target: 5'- cGCGgcccGcGCGGCGCCCCCgGGcGCGg -3' miRNA: 3'- cUGCau--CuUGUCGUGGGGGaCCaCGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 49690 | 0.68 | 0.736071 |
Target: 5'- gGACGcgcccccggAGAGC-GCACCCCCUccccgggagggGGUGCu -3' miRNA: 3'- -CUGCa--------UCUUGuCGUGGGGGA-----------CCACGu -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 4989 | 0.68 | 0.745914 |
Target: 5'- -uUGUGGAGCGGCGCUUCCUGc-GCGg -3' miRNA: 3'- cuGCAUCUUGUCGUGGGGGACcaCGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 74277 | 0.68 | 0.755656 |
Target: 5'- cGGCGUAGuaguagaucuugGACAGCACCgaCCacucggcgucgUGGUGCGg -3' miRNA: 3'- -CUGCAUC------------UUGUCGUGGg-GG-----------ACCACGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 103318 | 0.68 | 0.774794 |
Target: 5'- cGACGccGAGCuGCGCaCgCUGGUGCAg -3' miRNA: 3'- -CUGCauCUUGuCGUGgGgGACCACGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 77857 | 0.68 | 0.783241 |
Target: 5'- uGACGgagGGGcucuuugACGGCAUCCCCgGcGUGCGc -3' miRNA: 3'- -CUGCa--UCU-------UGUCGUGGGGGaC-CACGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 142009 | 0.68 | 0.784173 |
Target: 5'- cGGCGUGGGGCggguguGGCACCa-CgugGGUGCAu -3' miRNA: 3'- -CUGCAUCUUG------UCGUGGggGa--CCACGU- -5' |
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29578 | 5' | -56.4 | NC_006151.1 | + | 21970 | 0.69 | 0.726135 |
Target: 5'- cGGCGUGGugcggcgccGGCAGCGCCCaaagaucugCCUGGggucGCAg -3' miRNA: 3'- -CUGCAUC---------UUGUCGUGGG---------GGACCa---CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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