Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 29578 | 5' | -56.4 | NC_006151.1 | + | 2211 | 0.66 | 0.853437 |
|
Target: 5'- --gGUGGGucuccACGGCGCCCCC-GGcgGCGg -3' miRNA: 3'- cugCAUCU-----UGUCGUGGGGGaCCa-CGU- -5' |
|||||||
| 29578 | 5' | -56.4 | NC_006151.1 | + | 5340 | 0.66 | 0.861252 |
|
Target: 5'- cGCGgcGGAgGGCGCCCUCUccGGcGCGg -3' miRNA: 3'- cUGCauCUUgUCGUGGGGGA--CCaCGU- -5' |
|||||||
| 29578 | 5' | -56.4 | NC_006151.1 | + | 131907 | 0.66 | 0.868855 |
|
Target: 5'- cGACG-GGGGCGGCagcaggGCCUCCgcGGUGCu -3' miRNA: 3'- -CUGCaUCUUGUCG------UGGGGGa-CCACGu -5' |
|||||||
| 29578 | 5' | -56.4 | NC_006151.1 | + | 31730 | 0.66 | 0.876241 |
|
Target: 5'- gGGCGUGGAGaGGCGCCCgCgccgGGgacGCGc -3' miRNA: 3'- -CUGCAUCUUgUCGUGGGgGa---CCa--CGU- -5' |
|||||||
| 29578 | 5' | -56.4 | NC_006151.1 | + | 39933 | 0.66 | 0.876241 |
|
Target: 5'- cGACGccGA--GGcCGCCCCgCUGGUGCu -3' miRNA: 3'- -CUGCauCUugUC-GUGGGG-GACCACGu -5' |
|||||||
| 29578 | 5' | -56.4 | NC_006151.1 | + | 127476 | 0.66 | 0.876241 |
|
Target: 5'- cGGCGcGGAACgAGCcgcggACCCCgcgccggaagCUGGUGCGc -3' miRNA: 3'- -CUGCaUCUUG-UCG-----UGGGG----------GACCACGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home