Results 1 - 19 of 19 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 86958 | 0.73 | 0.630483 |
Target: 5'- uUUUUCAcGCGGGugGGUUUCCCGCg-- -3' miRNA: 3'- -AAAAGU-UGCUCugCCGAGGGGUGacu -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 120426 | 0.67 | 0.924365 |
Target: 5'- --cUCGAuCGAGAUGGCauUCUCCACg-- -3' miRNA: 3'- aaaAGUU-GCUCUGCCG--AGGGGUGacu -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 4872 | 0.67 | 0.924365 |
Target: 5'- --cUCGAuCGAGAUGGCauUCUCCACg-- -3' miRNA: 3'- aaaAGUU-GCUCUGCCG--AGGGGUGacu -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 76913 | 0.67 | 0.911956 |
Target: 5'- aUUUCAugGAuuugauuuucaauGGCGGUgCCCUugUGAa -3' miRNA: 3'- aAAAGUugCU-------------CUGCCGaGGGGugACU- -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 102041 | 0.68 | 0.89976 |
Target: 5'- ---gCGAUGAGAUGG-UCCCCGCg-- -3' miRNA: 3'- aaaaGUUGCUCUGCCgAGGGGUGacu -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 120185 | 0.68 | 0.892978 |
Target: 5'- --cUCGACGAu-CGGCUCuCCCGCa-- -3' miRNA: 3'- aaaAGUUGCUcuGCCGAG-GGGUGacu -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 4631 | 0.68 | 0.892978 |
Target: 5'- --cUCGACGAu-CGGCUCuCCCGCa-- -3' miRNA: 3'- aaaAGUUGCUcuGCCGAG-GGGUGacu -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 47487 | 0.73 | 0.641106 |
Target: 5'- -cUUCAACGGGAUGGUcuUCCCCGuCUa- -3' miRNA: 3'- aaAAGUUGCUCUGCCG--AGGGGU-GAcu -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 46823 | 0.66 | 0.942051 |
Target: 5'- --cUCggUGAGACgGGCUaucuuccuggcgaaCCCGCUGGu -3' miRNA: 3'- aaaAGuuGCUCUG-CCGAg-------------GGGUGACU- -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 21667 | 0.67 | 0.918597 |
Target: 5'- --aUCAuguacCGAGA-GGUUcCCCCGCUGAu -3' miRNA: 3'- aaaAGUu----GCUCUgCCGA-GGGGUGACU- -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 89213 | 0.67 | 0.918597 |
Target: 5'- --gUCAugGAGcGCGGCguccUCCCCAUg-- -3' miRNA: 3'- aaaAGUugCUC-UGCCG----AGGGGUGacu -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 9149 | 0.67 | 0.918597 |
Target: 5'- -gUUCugaAACGGGACGGCguaCCCCG-UGGg -3' miRNA: 3'- aaAAG---UUGCUCUGCCGa--GGGGUgACU- -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 124703 | 0.67 | 0.918597 |
Target: 5'- -gUUCugaAACGGGACGGCguaCCCCG-UGGg -3' miRNA: 3'- aaAAG---UUGCUCUGCCGa--GGGGUgACU- -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 118278 | 0.68 | 0.892978 |
Target: 5'- -cUUCAACGAcGACGGUaCCacccaaCGCUGGg -3' miRNA: 3'- aaAAGUUGCU-CUGCCGaGGg-----GUGACU- -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 28425 | 0.68 | 0.885949 |
Target: 5'- ----gAGCGAGGCGGCgCUCCGCg-- -3' miRNA: 3'- aaaagUUGCUCUGCCGaGGGGUGacu -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 2724 | 0.71 | 0.725014 |
Target: 5'- -cUUCAACGAcGACGGUaccaUCCCaaCGCUGGg -3' miRNA: 3'- aaAAGUUGCU-CUGCCG----AGGG--GUGACU- -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 93662 | 0.73 | 0.65172 |
Target: 5'- ---aCGACGGGA-GGCUCggCCCACUGGa -3' miRNA: 3'- aaaaGUUGCUCUgCCGAG--GGGUGACU- -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 82994 | 1.07 | 0.005333 |
Target: 5'- aUUUUCAACGAGACGGCUCCCCACUGAg -3' miRNA: 3'- -AAAAGUUGCUCUGCCGAGGGGUGACU- -5' |
|||||||
2958 | 5' | -53.2 | NC_001493.1 | + | 19421 | 0.66 | 0.944865 |
Target: 5'- --aUCGACuuuGAGAUGGCgcaCCCGCUcGAc -3' miRNA: 3'- aaaAGUUG---CUCUGCCGag-GGGUGA-CU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home