Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29581 | 3' | -57.3 | NC_006151.1 | + | 100022 | 0.66 | 0.881406 |
Target: 5'- ----aCGcgCGCaaCGUCGAGGCgCUCGc -3' miRNA: 3'- gaagaGCuaGCG--GCAGCUCCGgGAGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 14664 | 0.66 | 0.881406 |
Target: 5'- gUUC-CgGGUCGgCGUCGGGGagCCUCGc -3' miRNA: 3'- gAAGaG-CUAGCgGCAGCUCCg-GGAGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 104919 | 0.66 | 0.874383 |
Target: 5'- ----gCGcgCGaCCGcgaCGGGGCCCUCGa -3' miRNA: 3'- gaagaGCuaGC-GGCa--GCUCCGGGAGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 135755 | 0.66 | 0.867884 |
Target: 5'- -gUCUCGuacgcgugggacggCGCCGggcuggaCGAGGCCUUCu -3' miRNA: 3'- gaAGAGCua------------GCGGCa------GCUCCGGGAGc -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 119659 | 0.66 | 0.859715 |
Target: 5'- --gCUCGGcaacuaCGCCucGUaCGGGGCCCUCa -3' miRNA: 3'- gaaGAGCUa-----GCGG--CA-GCUCCGGGAGc -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 65952 | 0.66 | 0.85208 |
Target: 5'- -cUCgUCGAgcgcggccgCGUCGUCGAgccGGUCCUCGc -3' miRNA: 3'- gaAG-AGCUa--------GCGGCAGCU---CCGGGAGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 142584 | 0.67 | 0.844253 |
Target: 5'- -cUCUcCGGUC-CCGgCGGGGCUCUCc -3' miRNA: 3'- gaAGA-GCUAGcGGCaGCUCCGGGAGc -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 8340 | 0.67 | 0.844253 |
Target: 5'- --cCUCGAUCGCgcccgccggacgCGgaggcgCGAGGCCCcCGc -3' miRNA: 3'- gaaGAGCUAGCG------------GCa-----GCUCCGGGaGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 78160 | 0.67 | 0.844253 |
Target: 5'- --cCUCGGcCGCCGuggUCGAGGCCgUg- -3' miRNA: 3'- gaaGAGCUaGCGGC---AGCUCCGGgAgc -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 81288 | 0.67 | 0.844253 |
Target: 5'- -aUCUCGGgcgcggcgCGCgCGaCGGGGUCCUCc -3' miRNA: 3'- gaAGAGCUa-------GCG-GCaGCUCCGGGAGc -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 89253 | 0.67 | 0.844253 |
Target: 5'- -gUgUCGAgCGCCGUCGuGGUCgaCGg -3' miRNA: 3'- gaAgAGCUaGCGGCAGCuCCGGgaGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 66755 | 0.67 | 0.836239 |
Target: 5'- cCUUCcgCGA-CGCCG-CGAcggccGCCCUCGg -3' miRNA: 3'- -GAAGa-GCUaGCGGCaGCUc----CGGGAGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 62330 | 0.67 | 0.836239 |
Target: 5'- --gCUacuUCGCCaaguucagCGAGGCCCUCGg -3' miRNA: 3'- gaaGAgcuAGCGGca------GCUCCGGGAGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 125187 | 0.67 | 0.81968 |
Target: 5'- --cCUCGGccUCGCCGgcgUCGuGGGCCCcgCGg -3' miRNA: 3'- gaaGAGCU--AGCGGC---AGC-UCCGGGa-GC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 100086 | 0.67 | 0.81968 |
Target: 5'- --gCUCGAggCGCCGgcgccggCGccGCCCUCGc -3' miRNA: 3'- gaaGAGCUa-GCGGCa------GCucCGGGAGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 95568 | 0.67 | 0.81968 |
Target: 5'- --aCUCGA-CGCCGaggcCGAGGCgCUCc -3' miRNA: 3'- gaaGAGCUaGCGGCa---GCUCCGgGAGc -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 99616 | 0.67 | 0.81968 |
Target: 5'- gCUgg-CGcacagCGCCGcgcgCGAGGCCCUCa -3' miRNA: 3'- -GAagaGCua---GCGGCa---GCUCCGGGAGc -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 28053 | 0.67 | 0.81115 |
Target: 5'- ---aUCG-UCGUCGUCGAGGCCgaUGc -3' miRNA: 3'- gaagAGCuAGCGGCAGCUCCGGgaGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 70949 | 0.67 | 0.80856 |
Target: 5'- cCUUCUCGGcggugcgcgUgGCCGUCGAGGgCaacagcagccaggaCUCGg -3' miRNA: 3'- -GAAGAGCU---------AgCGGCAGCUCCgG--------------GAGC- -5' |
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29581 | 3' | -57.3 | NC_006151.1 | + | 66582 | 0.67 | 0.802463 |
Target: 5'- --gCUCGcgCGCgCGgcCGAGGCgCUCGa -3' miRNA: 3'- gaaGAGCuaGCG-GCa-GCUCCGgGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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