miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 3' -57.3 NC_006151.1 + 142584 0.67 0.844253
Target:  5'- -cUCUcCGGUC-CCGgCGGGGCUCUCc -3'
miRNA:   3'- gaAGA-GCUAGcGGCaGCUCCGGGAGc -5'
29581 3' -57.3 NC_006151.1 + 136870 0.68 0.793627
Target:  5'- ----gUGAcCGCCGUCGAGGagcgCCUCGc -3'
miRNA:   3'- gaagaGCUaGCGGCAGCUCCg---GGAGC- -5'
29581 3' -57.3 NC_006151.1 + 135755 0.66 0.867884
Target:  5'- -gUCUCGuacgcgugggacggCGCCGggcuggaCGAGGCCUUCu -3'
miRNA:   3'- gaAGAGCua------------GCGGCa------GCUCCGGGAGc -5'
29581 3' -57.3 NC_006151.1 + 125187 0.67 0.81968
Target:  5'- --cCUCGGccUCGCCGgcgUCGuGGGCCCcgCGg -3'
miRNA:   3'- gaaGAGCU--AGCGGC---AGC-UCCGGGa-GC- -5'
29581 3' -57.3 NC_006151.1 + 119659 0.66 0.859715
Target:  5'- --gCUCGGcaacuaCGCCucGUaCGGGGCCCUCa -3'
miRNA:   3'- gaaGAGCUa-----GCGG--CA-GCUCCGGGAGc -5'
29581 3' -57.3 NC_006151.1 + 114825 0.69 0.741782
Target:  5'- --aCUCGGUguugaggggcaCGCCGUgcgcgaccacguaggCGGGGUCCUCGg -3'
miRNA:   3'- gaaGAGCUA-----------GCGGCA---------------GCUCCGGGAGC- -5'
29581 3' -57.3 NC_006151.1 + 114236 0.68 0.754133
Target:  5'- --cCUCGGUgGCCGcgCGGGaccccucggagcgcGCCCUCGa -3'
miRNA:   3'- gaaGAGCUAgCGGCa-GCUC--------------CGGGAGC- -5'
29581 3' -57.3 NC_006151.1 + 111466 0.73 0.472657
Target:  5'- -gUCUgCGAggCGUCGUCGGGGCCCa-- -3'
miRNA:   3'- gaAGA-GCUa-GCGGCAGCUCCGGGagc -5'
29581 3' -57.3 NC_006151.1 + 105448 0.7 0.649005
Target:  5'- --aCUCGG-CGCgCGcCGGGGCCCUgGg -3'
miRNA:   3'- gaaGAGCUaGCG-GCaGCUCCGGGAgC- -5'
29581 3' -57.3 NC_006151.1 + 105050 0.68 0.766307
Target:  5'- --gCUCGG-CGCCGUCGAGgaggcGCCCg-- -3'
miRNA:   3'- gaaGAGCUaGCGGCAGCUC-----CGGGagc -5'
29581 3' -57.3 NC_006151.1 + 104919 0.66 0.874383
Target:  5'- ----gCGcgCGaCCGcgaCGGGGCCCUCGa -3'
miRNA:   3'- gaagaGCuaGC-GGCa--GCUCCGGGAGC- -5'
29581 3' -57.3 NC_006151.1 + 100086 0.67 0.81968
Target:  5'- --gCUCGAggCGCCGgcgccggCGccGCCCUCGc -3'
miRNA:   3'- gaaGAGCUa-GCGGCa------GCucCGGGAGC- -5'
29581 3' -57.3 NC_006151.1 + 100022 0.66 0.881406
Target:  5'- ----aCGcgCGCaaCGUCGAGGCgCUCGc -3'
miRNA:   3'- gaagaGCuaGCG--GCAGCUCCGgGAGC- -5'
29581 3' -57.3 NC_006151.1 + 99616 0.67 0.81968
Target:  5'- gCUgg-CGcacagCGCCGcgcgCGAGGCCCUCa -3'
miRNA:   3'- -GAagaGCua---GCGGCa---GCUCCGGGAGc -5'
29581 3' -57.3 NC_006151.1 + 95568 0.67 0.81968
Target:  5'- --aCUCGA-CGCCGaggcCGAGGCgCUCc -3'
miRNA:   3'- gaaGAGCUaGCGGCa---GCUCCGgGAGc -5'
29581 3' -57.3 NC_006151.1 + 89253 0.67 0.844253
Target:  5'- -gUgUCGAgCGCCGUCGuGGUCgaCGg -3'
miRNA:   3'- gaAgAGCUaGCGGCAGCuCCGGgaGC- -5'
29581 3' -57.3 NC_006151.1 + 81288 0.67 0.844253
Target:  5'- -aUCUCGGgcgcggcgCGCgCGaCGGGGUCCUCc -3'
miRNA:   3'- gaAGAGCUa-------GCG-GCaGCUCCGGGAGc -5'
29581 3' -57.3 NC_006151.1 + 78160 0.67 0.844253
Target:  5'- --cCUCGGcCGCCGuggUCGAGGCCgUg- -3'
miRNA:   3'- gaaGAGCUaGCGGC---AGCUCCGGgAgc -5'
29581 3' -57.3 NC_006151.1 + 76220 0.7 0.659049
Target:  5'- ----gUGcgUGCCGUCGAGGUUCUCGc -3'
miRNA:   3'- gaagaGCuaGCGGCAGCUCCGGGAGC- -5'
29581 3' -57.3 NC_006151.1 + 70949 0.67 0.80856
Target:  5'- cCUUCUCGGcggugcgcgUgGCCGUCGAGGgCaacagcagccaggaCUCGg -3'
miRNA:   3'- -GAAGAGCU---------AgCGGCAGCUCCgG--------------GAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.