miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 119762 0.67 0.849963
Target:  5'- uGGCGG--ACgUgGcCGGCGCGCGCAUn -3'
miRNA:   3'- -CCGCUcuUGgAgCuGCCGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 135941 0.67 0.849963
Target:  5'- cGCGGGGAgccCCUCG-CGGCGCGgGaCGUc -3'
miRNA:   3'- cCGCUCUU---GGAGCuGCCGUGCgU-GUA- -5'
29581 5' -56.5 NC_006151.1 + 95646 0.67 0.841943
Target:  5'- aGGCGcggucgucaaAGAGCguccaCUUGACGGCGCGCuCGc -3'
miRNA:   3'- -CCGC----------UCUUG-----GAGCUGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 93739 0.67 0.841943
Target:  5'- uGGUGGaugcGGGCCUCGuCGGgGCGCGgGg -3'
miRNA:   3'- -CCGCU----CUUGGAGCuGCCgUGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 114326 0.67 0.833733
Target:  5'- -aCGGGGGCCUgcgCGACGuGCGCGUGCu- -3'
miRNA:   3'- ccGCUCUUGGA---GCUGC-CGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 51401 0.67 0.833733
Target:  5'- gGGCGAGcGCgUCG-CaGCGCGUGCAc -3'
miRNA:   3'- -CCGCUCuUGgAGCuGcCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 39294 0.67 0.841943
Target:  5'- cGGCGcGGGACCUCGGCuucGCcgGCGC-CGUg -3'
miRNA:   3'- -CCGC-UCUUGGAGCUGc--CG--UGCGuGUA- -5'
29581 5' -56.5 NC_006151.1 + 103754 0.67 0.841943
Target:  5'- uGCGAGGAgCgCGccGCGGCGCuGCGCGa -3'
miRNA:   3'- cCGCUCUUgGaGC--UGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 53240 0.67 0.841943
Target:  5'- cGUGAGcagguUCUCGcUGGCGCGCACGc -3'
miRNA:   3'- cCGCUCuu---GGAGCuGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 58328 0.67 0.841943
Target:  5'- cGGCGcGccGGCCUCcGCguaGGCGCGCGCGa -3'
miRNA:   3'- -CCGCuC--UUGGAGcUG---CCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 69167 0.67 0.841943
Target:  5'- cGCucGcacuCCUCGGCGaGCACGCGCGc -3'
miRNA:   3'- cCGcuCuu--GGAGCUGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 87897 0.67 0.841943
Target:  5'- cGCGGGGcgucacggccccGCC-CGGCGGUaguagACGCACGUc -3'
miRNA:   3'- cCGCUCU------------UGGaGCUGCCG-----UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 100889 0.68 0.799132
Target:  5'- --gGAGGugCUgCGccGCGGCGCGCGCGc -3'
miRNA:   3'- ccgCUCUugGA-GC--UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 112032 0.68 0.799132
Target:  5'- cGGCGGGAGCUggggcCGGCGG-GCGgGCGg -3'
miRNA:   3'- -CCGCUCUUGGa----GCUGCCgUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 72774 0.68 0.799132
Target:  5'- cGGCGGGuacGCCUCcugGAaGaGCGCGCACGg -3'
miRNA:   3'- -CCGCUCu--UGGAG---CUgC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 86453 0.68 0.799132
Target:  5'- cGGCGAGGcCCcCGACGagacGCucuuuGCGCACGUg -3'
miRNA:   3'- -CCGCUCUuGGaGCUGC----CG-----UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 119978 0.68 0.799132
Target:  5'- cGGCGAcGAGCUUCc-UGGCGCgGCGCAc -3'
miRNA:   3'- -CCGCU-CUUGGAGcuGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 131955 0.68 0.799132
Target:  5'- gGGCGAGGGCg--GGCGGCA-GUACGUg -3'
miRNA:   3'- -CCGCUCUUGgagCUGCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 136419 0.68 0.799132
Target:  5'- cGCGGGGcCCcgCGGCGGCGCacgccGCGCGc -3'
miRNA:   3'- cCGCUCUuGGa-GCUGCCGUG-----CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 20627 0.68 0.799132
Target:  5'- uGGUGGGGGcgcccCCUgGGCGGCACcagggccgucaGCACAa -3'
miRNA:   3'- -CCGCUCUU-----GGAgCUGCCGUG-----------CGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.