miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 73762 0.68 0.768745
Target:  5'- aGUGGGGcacgcagggcacguGCUgggCGGCGGCGCGCACc- -3'
miRNA:   3'- cCGCUCU--------------UGGa--GCUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 127445 0.68 0.762118
Target:  5'- cGCGAGAGCC--GGCGGCGCacgaaGCGCu- -3'
miRNA:   3'- cCGCUCUUGGagCUGCCGUG-----CGUGua -5'
29581 5' -56.5 NC_006151.1 + 78698 0.68 0.762118
Target:  5'- cGGCcGGGGCCUcgucgccgCGACGGCgcccgugggGCGCGCGc -3'
miRNA:   3'- -CCGcUCUUGGA--------GCUGCCG---------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 60867 0.68 0.762118
Target:  5'- -aCGAGGACC-CG-CGGCAgcCGCGCAg -3'
miRNA:   3'- ccGCUCUUGGaGCuGCCGU--GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 45537 0.68 0.762118
Target:  5'- cGCGGGAggGCCcgcuucccaCGACGGCGCGCcCGg -3'
miRNA:   3'- cCGCUCU--UGGa--------GCUGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 19716 0.68 0.790083
Target:  5'- aGGCGAGGGCCgagcCGAa-GCcCGCGCGg -3'
miRNA:   3'- -CCGCUCUUGGa---GCUgcCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 49486 0.68 0.790083
Target:  5'- aGCGuGGACUgagUCgGGCGuGCGCGCACAc -3'
miRNA:   3'- cCGCuCUUGG---AG-CUGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 90772 0.68 0.790083
Target:  5'- uGGCGGGG---UCGGCGG-GCGCGCAg -3'
miRNA:   3'- -CCGCUCUuggAGCUGCCgUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 136419 0.68 0.799132
Target:  5'- cGCGGGGcCCcgCGGCGGCGCacgccGCGCGc -3'
miRNA:   3'- cCGCUCUuGGa-GCUGCCGUG-----CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 131955 0.68 0.799132
Target:  5'- gGGCGAGGGCg--GGCGGCA-GUACGUg -3'
miRNA:   3'- -CCGCUCUUGgagCUGCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 119978 0.68 0.799132
Target:  5'- cGGCGAcGAGCUUCc-UGGCGCgGCGCAc -3'
miRNA:   3'- -CCGCU-CUUGGAGcuGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 86453 0.68 0.799132
Target:  5'- cGGCGAGGcCCcCGACGagacGCucuuuGCGCACGUg -3'
miRNA:   3'- -CCGCUCUuGGaGCUGC----CG-----UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 72774 0.68 0.799132
Target:  5'- cGGCGGGuacGCCUCcugGAaGaGCGCGCACGg -3'
miRNA:   3'- -CCGCUCu--UGGAG---CUgC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 112032 0.68 0.799132
Target:  5'- cGGCGGGAGCUggggcCGGCGG-GCGgGCGg -3'
miRNA:   3'- -CCGCUCUUGGa----GCUGCCgUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 100889 0.68 0.799132
Target:  5'- --gGAGGugCUgCGccGCGGCGCGCGCGc -3'
miRNA:   3'- ccgCUCUugGA-GC--UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 20627 0.68 0.799132
Target:  5'- uGGUGGGGGcgcccCCUgGGCGGCACcagggccgucaGCACAa -3'
miRNA:   3'- -CCGCUCUU-----GGAgCUGCCGUG-----------CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 129999 0.68 0.790083
Target:  5'- cGuCGGGGAUgUCcgaGACGGCGCGCGCc- -3'
miRNA:   3'- cC-GCUCUUGgAG---CUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 69990 0.68 0.790083
Target:  5'- cGGCGGcAGCgucagcacgcuCUCGACGGCGCccgucuGCACGUg -3'
miRNA:   3'- -CCGCUcUUG-----------GAGCUGCCGUG------CGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 68279 0.68 0.790083
Target:  5'- cGGCGccgGGcGCCaCGGCGGCcagGCGCGCGc -3'
miRNA:   3'- -CCGC---UCuUGGaGCUGCCG---UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 96656 0.68 0.790083
Target:  5'- cGGCGAGGGCCcgggCGACguccucggGGCAgGCgGCGUc -3'
miRNA:   3'- -CCGCUCUUGGa---GCUG--------CCGUgCG-UGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.