miRNA display CGI


Results 121 - 140 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 69990 0.68 0.790083
Target:  5'- cGGCGGcAGCgucagcacgcuCUCGACGGCGCccgucuGCACGUg -3'
miRNA:   3'- -CCGCUcUUG-----------GAGCUGCCGUG------CGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 129999 0.68 0.790083
Target:  5'- cGuCGGGGAUgUCcgaGACGGCGCGCGCc- -3'
miRNA:   3'- cC-GCUCUUGgAG---CUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 20627 0.68 0.799132
Target:  5'- uGGUGGGGGcgcccCCUgGGCGGCACcagggccgucaGCACAa -3'
miRNA:   3'- -CCGCUCUU-----GGAgCUGCCGUG-----------CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 124045 0.69 0.742882
Target:  5'- cGGCGAGuacggcGACCUgGACGcGCggacggccguGCGCGCGg -3'
miRNA:   3'- -CCGCUC------UUGGAgCUGC-CG----------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 28183 0.69 0.742882
Target:  5'- cGGCGAGuGCCgUCGGCcgGGCcgccACGCACc- -3'
miRNA:   3'- -CCGCUCuUGG-AGCUG--CCG----UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 20137 0.69 0.742882
Target:  5'- gGGCGGGcGCCgCGGgGGCG-GCGCGUg -3'
miRNA:   3'- -CCGCUCuUGGaGCUgCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 119787 0.69 0.739962
Target:  5'- cGGCGAGAcggugacggaccacGCCggcuucCGGCACGCGCu- -3'
miRNA:   3'- -CCGCUCU--------------UGGagcu--GCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 64483 0.69 0.739962
Target:  5'- cGGCGGGGACgcccgcgggcgcgggCGGCgGGCGCGCGCc- -3'
miRNA:   3'- -CCGCUCUUGga-------------GCUG-CCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 88256 0.69 0.733114
Target:  5'- cGGCGAagcCCUCGACGaaGCGCACc- -3'
miRNA:   3'- -CCGCUcuuGGAGCUGCcgUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 17476 0.69 0.733114
Target:  5'- cGGCGuGuccuCgUCGGCGGCGCGC-CGc -3'
miRNA:   3'- -CCGCuCuu--GgAGCUGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 129421 0.69 0.742882
Target:  5'- cGGCGAGGucgacguccgGCCccaagUgGGCGGgGCGCACGg -3'
miRNA:   3'- -CCGCUCU----------UGG-----AgCUGCCgUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 137108 0.69 0.742882
Target:  5'- uGGcCGGGGacGCCUgggggcgcgCGACGGCGCgGCGCGa -3'
miRNA:   3'- -CC-GCUCU--UGGA---------GCUGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 121379 0.69 0.742882
Target:  5'- cGGCGAGGagaccGCCuUCGacuuuggggccuGCGGCGCGgGCGg -3'
miRNA:   3'- -CCGCUCU-----UGG-AGC------------UGCCGUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 8242 0.69 0.752553
Target:  5'- cGGgGAGGGCCggGcCGGCGCGC-CGg -3'
miRNA:   3'- -CCgCUCUUGGagCuGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 96455 0.69 0.752553
Target:  5'- aGGCGuccAGGuccGCCUCG-CGGCuccgcACGCGCAg -3'
miRNA:   3'- -CCGC---UCU---UGGAGCuGCCG-----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 21002 0.69 0.752553
Target:  5'- cGGCGcu-GCCggCGACGuGCACGCugAc -3'
miRNA:   3'- -CCGCucuUGGa-GCUGC-CGUGCGugUa -5'
29581 5' -56.5 NC_006151.1 + 64440 0.69 0.752553
Target:  5'- cGCGuGGccGCCUCcaccgucaggauGGCGGCGCGCGCc- -3'
miRNA:   3'- cCGCuCU--UGGAG------------CUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 98694 0.69 0.752553
Target:  5'- cGCGucgugcccccGGAGCa--GACGGCGCGCGCGc -3'
miRNA:   3'- cCGC----------UCUUGgagCUGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 67857 0.69 0.752553
Target:  5'- cGGCGAGccGGCgC-CGAggUGGCGCGCGCGc -3'
miRNA:   3'- -CCGCUC--UUG-GaGCU--GCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 115135 0.69 0.733114
Target:  5'- cGCGuGcGCCUCGGCcaGCACGCGCc- -3'
miRNA:   3'- cCGCuCuUGGAGCUGc-CGUGCGUGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.