Results 141 - 160 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29581 | 5' | -56.5 | NC_006151.1 | + | 68394 | 0.69 | 0.752553 |
Target: 5'- cGCGGccACCUCcAUGGCGCGCGCc- -3' miRNA: 3'- cCGCUcuUGGAGcUGCCGUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 67857 | 0.69 | 0.752553 |
Target: 5'- cGGCGAGccGGCgC-CGAggUGGCGCGCGCGc -3' miRNA: 3'- -CCGCUC--UUG-GaGCU--GCCGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 98694 | 0.69 | 0.752553 |
Target: 5'- cGCGucgugcccccGGAGCa--GACGGCGCGCGCGc -3' miRNA: 3'- cCGC----------UCUUGgagCUGCCGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 64440 | 0.69 | 0.752553 |
Target: 5'- cGCGuGGccGCCUCcaccgucaggauGGCGGCGCGCGCc- -3' miRNA: 3'- cCGCuCU--UGGAG------------CUGCCGUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 21002 | 0.69 | 0.752553 |
Target: 5'- cGGCGcu-GCCggCGACGuGCACGCugAc -3' miRNA: 3'- -CCGCucuUGGa-GCUGC-CGUGCGugUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 96455 | 0.69 | 0.752553 |
Target: 5'- aGGCGuccAGGuccGCCUCG-CGGCuccgcACGCGCAg -3' miRNA: 3'- -CCGC---UCU---UGGAGCuGCCG-----UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 8242 | 0.69 | 0.752553 |
Target: 5'- cGGgGAGGGCCggGcCGGCGCGC-CGg -3' miRNA: 3'- -CCgCUCUUGGagCuGCCGUGCGuGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 121379 | 0.69 | 0.742882 |
Target: 5'- cGGCGAGGagaccGCCuUCGacuuuggggccuGCGGCGCGgGCGg -3' miRNA: 3'- -CCGCUCU-----UGG-AGC------------UGCCGUGCgUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 119787 | 0.69 | 0.739962 |
Target: 5'- cGGCGAGAcggugacggaccacGCCggcuucCGGCACGCGCu- -3' miRNA: 3'- -CCGCUCU--------------UGGagcu--GCCGUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 20137 | 0.69 | 0.742882 |
Target: 5'- gGGCGGGcGCCgCGGgGGCG-GCGCGUg -3' miRNA: 3'- -CCGCUCuUGGaGCUgCCGUgCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 28183 | 0.69 | 0.742882 |
Target: 5'- cGGCGAGuGCCgUCGGCcgGGCcgccACGCACc- -3' miRNA: 3'- -CCGCUCuUGG-AGCUG--CCG----UGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 124045 | 0.69 | 0.742882 |
Target: 5'- cGGCGAGuacggcGACCUgGACGcGCggacggccguGCGCGCGg -3' miRNA: 3'- -CCGCUC------UUGGAgCUGC-CG----------UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 129421 | 0.69 | 0.742882 |
Target: 5'- cGGCGAGGucgacguccgGCCccaagUgGGCGGgGCGCACGg -3' miRNA: 3'- -CCGCUCU----------UGG-----AgCUGCCgUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 137108 | 0.69 | 0.742882 |
Target: 5'- uGGcCGGGGacGCCUgggggcgcgCGACGGCGCgGCGCGa -3' miRNA: 3'- -CC-GCUCU--UGGA---------GCUGCCGUG-CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 99899 | 0.7 | 0.672987 |
Target: 5'- uGGCGcAGGugCUgaCGugGGCGCGCGa-- -3' miRNA: 3'- -CCGC-UCUugGA--GCugCCGUGCGUgua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 23250 | 0.7 | 0.683144 |
Target: 5'- -uCGGGGGCCUCGGgGGCAuCGC-CGUg -3' miRNA: 3'- ccGCUCUUGGAGCUgCCGU-GCGuGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 119034 | 0.7 | 0.683144 |
Target: 5'- aGGCGGGcGCCaaggaCGGCGGCGC-CGCGg -3' miRNA: 3'- -CCGCUCuUGGa----GCUGCCGUGcGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 97182 | 0.7 | 0.683144 |
Target: 5'- cGGCGcacGAcGCgCUCGACGGUgccgagGCGCACGUa -3' miRNA: 3'- -CCGCu--CU-UG-GAGCUGCCG------UGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 94002 | 0.7 | 0.692249 |
Target: 5'- cGGCG-GAugGCCUCGucccgcaGCGccGCGCGCACGUa -3' miRNA: 3'- -CCGCuCU--UGGAGC-------UGC--CGUGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 97277 | 0.7 | 0.672987 |
Target: 5'- gGGC-AGcGCCUCGGCGGCGgGCGu-- -3' miRNA: 3'- -CCGcUCuUGGAGCUGCCGUgCGUgua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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