miRNA display CGI


Results 121 - 140 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 96656 0.68 0.790083
Target:  5'- cGGCGAGGGCCcgggCGACguccucggGGCAgGCgGCGUc -3'
miRNA:   3'- -CCGCUCUUGGa---GCUG--------CCGUgCG-UGUA- -5'
29581 5' -56.5 NC_006151.1 + 68279 0.68 0.790083
Target:  5'- cGGCGccgGGcGCCaCGGCGGCcagGCGCGCGc -3'
miRNA:   3'- -CCGC---UCuUGGaGCUGCCG---UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 69990 0.68 0.790083
Target:  5'- cGGCGGcAGCgucagcacgcuCUCGACGGCGCccgucuGCACGUg -3'
miRNA:   3'- -CCGCUcUUG-----------GAGCUGCCGUG------CGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 129999 0.68 0.790083
Target:  5'- cGuCGGGGAUgUCcgaGACGGCGCGCGCc- -3'
miRNA:   3'- cC-GCUCUUGgAG---CUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 100889 0.68 0.799132
Target:  5'- --gGAGGugCUgCGccGCGGCGCGCGCGc -3'
miRNA:   3'- ccgCUCUugGA-GC--UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 112032 0.68 0.799132
Target:  5'- cGGCGGGAGCUggggcCGGCGG-GCGgGCGg -3'
miRNA:   3'- -CCGCUCUUGGa----GCUGCCgUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 72774 0.68 0.799132
Target:  5'- cGGCGGGuacGCCUCcugGAaGaGCGCGCACGg -3'
miRNA:   3'- -CCGCUCu--UGGAG---CUgC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 86453 0.68 0.799132
Target:  5'- cGGCGAGGcCCcCGACGagacGCucuuuGCGCACGUg -3'
miRNA:   3'- -CCGCUCUuGGaGCUGC----CG-----UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 131955 0.68 0.799132
Target:  5'- gGGCGAGGGCg--GGCGGCA-GUACGUg -3'
miRNA:   3'- -CCGCUCUUGgagCUGCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 19716 0.68 0.790083
Target:  5'- aGGCGAGGGCCgagcCGAa-GCcCGCGCGg -3'
miRNA:   3'- -CCGCUCUUGGa---GCUgcCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 82654 0.68 0.789171
Target:  5'- cGGCGAGGgcggcccACC-CuGCGGCGCGcCGCGg -3'
miRNA:   3'- -CCGCUCU-------UGGaGcUGCCGUGC-GUGUa -5'
29581 5' -56.5 NC_006151.1 + 36055 0.68 0.771567
Target:  5'- cGGCGAGGAUCUCcucuuCGGCcCGgGCGg -3'
miRNA:   3'- -CCGCUCUUGGAGcu---GCCGuGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 64552 0.68 0.771567
Target:  5'- cGGCGAGGccguggcgcgccAgCUCGACGaGCAggucgUGCACGUa -3'
miRNA:   3'- -CCGCUCU------------UgGAGCUGC-CGU-----GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 100699 0.68 0.771567
Target:  5'- cGCGAG-ACCUgGACcgaGGCGCGCGa-- -3'
miRNA:   3'- cCGCUCuUGGAgCUG---CCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 82427 0.68 0.780892
Target:  5'- aGGCGcGGGCgCUCGcGCgGGCGCuGCACAa -3'
miRNA:   3'- -CCGCuCUUG-GAGC-UG-CCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 130291 0.68 0.780892
Target:  5'- gGGCGcGcGCCggcCGACGGCgcggaGCGCGCGc -3'
miRNA:   3'- -CCGCuCuUGGa--GCUGCCG-----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 122494 0.68 0.780892
Target:  5'- gGGCGAGAcgGCg-CGcCGGCGCGCGgAc -3'
miRNA:   3'- -CCGCUCU--UGgaGCuGCCGUGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 127815 0.68 0.780892
Target:  5'- cGCGAGGuCCUUG-CGGUucACGUACGUg -3'
miRNA:   3'- cCGCUCUuGGAGCuGCCG--UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 119978 0.68 0.799132
Target:  5'- cGGCGAcGAGCUUCc-UGGCGCgGCGCAc -3'
miRNA:   3'- -CCGCU-CUUGGAGcuGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 95646 0.67 0.841943
Target:  5'- aGGCGcggucgucaaAGAGCguccaCUUGACGGCGCGCuCGc -3'
miRNA:   3'- -CCGC----------UCUUG-----GAGCUGCCGUGCGuGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.