miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 47258 0.69 0.703322
Target:  5'- uGGCGAGAuggACCgCucCGGCGCGCAgCGUc -3'
miRNA:   3'- -CCGCUCU---UGGaGcuGCCGUGCGU-GUA- -5'
29581 5' -56.5 NC_006151.1 + 59663 0.69 0.713325
Target:  5'- uGCGcAGcGCCUCgggGACGcGCGCGCACGc -3'
miRNA:   3'- cCGC-UCuUGGAG---CUGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 90742 0.69 0.713325
Target:  5'- cGGCGGcgcCCUCGgggGCGGCGgGCACGg -3'
miRNA:   3'- -CCGCUcuuGGAGC---UGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 103405 0.69 0.723259
Target:  5'- gGGCGAcuuugccacgcuGGGCC-CGGCGGUggaccugcucGCGCACAUc -3'
miRNA:   3'- -CCGCU------------CUUGGaGCUGCCG----------UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 131545 0.69 0.723259
Target:  5'- uGCGAGcGCCUCG--GGCGcCGCACGg -3'
miRNA:   3'- cCGCUCuUGGAGCugCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 95959 0.69 0.723259
Target:  5'- aGCGAGAGCC-CGACGccgcCGCgGCGCAg -3'
miRNA:   3'- cCGCUCUUGGaGCUGCc---GUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 56594 0.69 0.723259
Target:  5'- uGGUGcGGAcgcGCCcCGGCGGCGCGCuCAc -3'
miRNA:   3'- -CCGC-UCU---UGGaGCUGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 120970 0.69 0.732133
Target:  5'- aGGCGGGGAaCUggagcgggcucaaCGGCGGCAaGCACGUg -3'
miRNA:   3'- -CCGCUCUUgGA-------------GCUGCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 88256 0.69 0.733114
Target:  5'- cGGCGAagcCCUCGACGaaGCGCACc- -3'
miRNA:   3'- -CCGCUcuuGGAGCUGCcgUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 17476 0.69 0.733114
Target:  5'- cGGCGuGuccuCgUCGGCGGCGCGC-CGc -3'
miRNA:   3'- -CCGCuCuu--GgAGCUGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 115135 0.69 0.733114
Target:  5'- cGCGuGcGCCUCGGCcaGCACGCGCc- -3'
miRNA:   3'- cCGCuCuUGGAGCUGc-CGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 104899 0.69 0.733114
Target:  5'- aGGUGGuGGACg-CGGCGGCGgCGCGCGa -3'
miRNA:   3'- -CCGCU-CUUGgaGCUGCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 113510 0.69 0.733114
Target:  5'- -uCGAGGGCUUCGugGCGGaCGCGCGCu- -3'
miRNA:   3'- ccGCUCUUGGAGC--UGCC-GUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 119787 0.69 0.739962
Target:  5'- cGGCGAGAcggugacggaccacGCCggcuucCGGCACGCGCu- -3'
miRNA:   3'- -CCGCUCU--------------UGGagcu--GCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 64483 0.69 0.739962
Target:  5'- cGGCGGGGACgcccgcgggcgcgggCGGCgGGCGCGCGCc- -3'
miRNA:   3'- -CCGCUCUUGga-------------GCUG-CCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 121379 0.69 0.742882
Target:  5'- cGGCGAGGagaccGCCuUCGacuuuggggccuGCGGCGCGgGCGg -3'
miRNA:   3'- -CCGCUCU-----UGG-AGC------------UGCCGUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 20137 0.69 0.742882
Target:  5'- gGGCGGGcGCCgCGGgGGCG-GCGCGUg -3'
miRNA:   3'- -CCGCUCuUGGaGCUgCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 28183 0.69 0.742882
Target:  5'- cGGCGAGuGCCgUCGGCcgGGCcgccACGCACc- -3'
miRNA:   3'- -CCGCUCuUGG-AGCUG--CCG----UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 124045 0.69 0.742882
Target:  5'- cGGCGAGuacggcGACCUgGACGcGCggacggccguGCGCGCGg -3'
miRNA:   3'- -CCGCUC------UUGGAgCUGC-CG----------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 129421 0.69 0.742882
Target:  5'- cGGCGAGGucgacguccgGCCccaagUgGGCGGgGCGCACGg -3'
miRNA:   3'- -CCGCUCU----------UGG-----AgCUGCCgUGCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.