miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 28183 0.69 0.742882
Target:  5'- cGGCGAGuGCCgUCGGCcgGGCcgccACGCACc- -3'
miRNA:   3'- -CCGCUCuUGG-AGCUG--CCG----UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 98694 0.69 0.752553
Target:  5'- cGCGucgugcccccGGAGCa--GACGGCGCGCGCGc -3'
miRNA:   3'- cCGC----------UCUUGgagCUGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 68394 0.69 0.752553
Target:  5'- cGCGGccACCUCcAUGGCGCGCGCc- -3'
miRNA:   3'- cCGCUcuUGGAGcUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 67857 0.69 0.752553
Target:  5'- cGGCGAGccGGCgC-CGAggUGGCGCGCGCGc -3'
miRNA:   3'- -CCGCUC--UUG-GaGCU--GCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 64440 0.69 0.752553
Target:  5'- cGCGuGGccGCCUCcaccgucaggauGGCGGCGCGCGCc- -3'
miRNA:   3'- cCGCuCU--UGGAG------------CUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 21002 0.69 0.752553
Target:  5'- cGGCGcu-GCCggCGACGuGCACGCugAc -3'
miRNA:   3'- -CCGCucuUGGa-GCUGC-CGUGCGugUa -5'
29581 5' -56.5 NC_006151.1 + 96455 0.69 0.752553
Target:  5'- aGGCGuccAGGuccGCCUCG-CGGCuccgcACGCGCAg -3'
miRNA:   3'- -CCGC---UCU---UGGAGCuGCCG-----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 8242 0.69 0.752553
Target:  5'- cGGgGAGGGCCggGcCGGCGCGC-CGg -3'
miRNA:   3'- -CCgCUCUUGGagCuGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 60867 0.68 0.762118
Target:  5'- -aCGAGGACC-CG-CGGCAgcCGCGCAg -3'
miRNA:   3'- ccGCUCUUGGaGCuGCCGU--GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 78698 0.68 0.762118
Target:  5'- cGGCcGGGGCCUcgucgccgCGACGGCgcccgugggGCGCGCGc -3'
miRNA:   3'- -CCGcUCUUGGA--------GCUGCCG---------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 127445 0.68 0.762118
Target:  5'- cGCGAGAGCC--GGCGGCGCacgaaGCGCu- -3'
miRNA:   3'- cCGCUCUUGGagCUGCCGUG-----CGUGua -5'
29581 5' -56.5 NC_006151.1 + 45537 0.68 0.762118
Target:  5'- cGCGGGAggGCCcgcuucccaCGACGGCGCGCcCGg -3'
miRNA:   3'- cCGCUCU--UGGa--------GCUGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 6150 0.68 0.762118
Target:  5'- cGCGAGGacggcggccucgGCCUCGGCGGCGuCGUc--- -3'
miRNA:   3'- cCGCUCU------------UGGAGCUGCCGU-GCGugua -5'
29581 5' -56.5 NC_006151.1 + 140448 0.68 0.762118
Target:  5'- cGGCGccuGCCUCGGCGGgaucauggaCGCGCugGa -3'
miRNA:   3'- -CCGCucuUGGAGCUGCC---------GUGCGugUa -5'
29581 5' -56.5 NC_006151.1 + 73762 0.68 0.768745
Target:  5'- aGUGGGGcacgcagggcacguGCUgggCGGCGGCGCGCACc- -3'
miRNA:   3'- cCGCUCU--------------UGGa--GCUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 100699 0.68 0.771567
Target:  5'- cGCGAG-ACCUgGACcgaGGCGCGCGa-- -3'
miRNA:   3'- cCGCUCuUGGAgCUG---CCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 64552 0.68 0.771567
Target:  5'- cGGCGAGGccguggcgcgccAgCUCGACGaGCAggucgUGCACGUa -3'
miRNA:   3'- -CCGCUCU------------UgGAGCUGC-CGU-----GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 36055 0.68 0.771567
Target:  5'- cGGCGAGGAUCUCcucuuCGGCcCGgGCGg -3'
miRNA:   3'- -CCGCUCUUGGAGcu---GCCGuGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 130291 0.68 0.780892
Target:  5'- gGGCGcGcGCCggcCGACGGCgcggaGCGCGCGc -3'
miRNA:   3'- -CCGCuCuUGGa--GCUGCCG-----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 122494 0.68 0.780892
Target:  5'- gGGCGAGAcgGCg-CGcCGGCGCGCGgAc -3'
miRNA:   3'- -CCGCUCU--UGgaGCuGCCGUGCGUgUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.