Results 121 - 140 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29581 | 5' | -56.5 | NC_006151.1 | + | 122494 | 0.68 | 0.780892 |
Target: 5'- gGGCGAGAcgGCg-CGcCGGCGCGCGgAc -3' miRNA: 3'- -CCGCUCU--UGgaGCuGCCGUGCGUgUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 127815 | 0.68 | 0.780892 |
Target: 5'- cGCGAGGuCCUUG-CGGUucACGUACGUg -3' miRNA: 3'- cCGCUCUuGGAGCuGCCG--UGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 82654 | 0.68 | 0.789171 |
Target: 5'- cGGCGAGGgcggcccACC-CuGCGGCGCGcCGCGg -3' miRNA: 3'- -CCGCUCU-------UGGaGcUGCCGUGC-GUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 129999 | 0.68 | 0.790083 |
Target: 5'- cGuCGGGGAUgUCcgaGACGGCGCGCGCc- -3' miRNA: 3'- cC-GCUCUUGgAG---CUGCCGUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 19716 | 0.68 | 0.790083 |
Target: 5'- aGGCGAGGGCCgagcCGAa-GCcCGCGCGg -3' miRNA: 3'- -CCGCUCUUGGa---GCUgcCGuGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 69990 | 0.68 | 0.790083 |
Target: 5'- cGGCGGcAGCgucagcacgcuCUCGACGGCGCccgucuGCACGUg -3' miRNA: 3'- -CCGCUcUUG-----------GAGCUGCCGUG------CGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 68279 | 0.68 | 0.790083 |
Target: 5'- cGGCGccgGGcGCCaCGGCGGCcagGCGCGCGc -3' miRNA: 3'- -CCGC---UCuUGGaGCUGCCG---UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 96656 | 0.68 | 0.790083 |
Target: 5'- cGGCGAGGGCCcgggCGACguccucggGGCAgGCgGCGUc -3' miRNA: 3'- -CCGCUCUUGGa---GCUG--------CCGUgCG-UGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 49486 | 0.68 | 0.790083 |
Target: 5'- aGCGuGGACUgagUCgGGCGuGCGCGCACAc -3' miRNA: 3'- cCGCuCUUGG---AG-CUGC-CGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 90772 | 0.68 | 0.790083 |
Target: 5'- uGGCGGGG---UCGGCGG-GCGCGCAg -3' miRNA: 3'- -CCGCUCUuggAGCUGCCgUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 20627 | 0.68 | 0.799132 |
Target: 5'- uGGUGGGGGcgcccCCUgGGCGGCACcagggccgucaGCACAa -3' miRNA: 3'- -CCGCUCUU-----GGAgCUGCCGUG-----------CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 128788 | 0.68 | 0.799132 |
Target: 5'- cGGCcucGGucGCCUCGGCGaGCgcgGCGCGCGUg -3' miRNA: 3'- -CCGc--UCu-UGGAGCUGC-CG---UGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 136419 | 0.68 | 0.799132 |
Target: 5'- cGCGGGGcCCcgCGGCGGCGCacgccGCGCGc -3' miRNA: 3'- cCGCUCUuGGa-GCUGCCGUG-----CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 131955 | 0.68 | 0.799132 |
Target: 5'- gGGCGAGGGCg--GGCGGCA-GUACGUg -3' miRNA: 3'- -CCGCUCUUGgagCUGCCGUgCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 86453 | 0.68 | 0.799132 |
Target: 5'- cGGCGAGGcCCcCGACGagacGCucuuuGCGCACGUg -3' miRNA: 3'- -CCGCUCUuGGaGCUGC----CG-----UGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 112032 | 0.68 | 0.799132 |
Target: 5'- cGGCGGGAGCUggggcCGGCGG-GCGgGCGg -3' miRNA: 3'- -CCGCUCUUGGa----GCUGCCgUGCgUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 72774 | 0.68 | 0.799132 |
Target: 5'- cGGCGGGuacGCCUCcugGAaGaGCGCGCACGg -3' miRNA: 3'- -CCGCUCu--UGGAG---CUgC-CGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 100889 | 0.68 | 0.799132 |
Target: 5'- --gGAGGugCUgCGccGCGGCGCGCGCGc -3' miRNA: 3'- ccgCUCUugGA-GC--UGCCGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 119978 | 0.68 | 0.799132 |
Target: 5'- cGGCGAcGAGCUUCc-UGGCGCgGCGCAc -3' miRNA: 3'- -CCGCU-CUUGGAGcuGCCGUG-CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 118222 | 0.67 | 0.807147 |
Target: 5'- uGGCGGGcGCCcggaccaccgggcUCGGCGGCGgGCuCAc -3' miRNA: 3'- -CCGCUCuUGG-------------AGCUGCCGUgCGuGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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