miRNA display CGI


Results 81 - 100 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 57480 0.67 0.825338
Target:  5'- cGCGGcGGCCUcgcaggCGACGcGCACGCGCu- -3'
miRNA:   3'- cCGCUcUUGGA------GCUGC-CGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 139103 0.67 0.825338
Target:  5'- uGGCGcuguucacGAcCCUCGGCGuCACGCGCGc -3'
miRNA:   3'- -CCGCu-------CUuGGAGCUGCcGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 123295 0.67 0.816768
Target:  5'- cGCGAGAcgggcuGCUUCGACGcGCACaGCuuCAUg -3'
miRNA:   3'- cCGCUCU------UGGAGCUGC-CGUG-CGu-GUA- -5'
29581 5' -56.5 NC_006151.1 + 24294 0.67 0.815902
Target:  5'- gGGCGGGAAcuCCUCGGgGuGCACcccgaggGCGCGg -3'
miRNA:   3'- -CCGCUCUU--GGAGCUgC-CGUG-------CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 117261 0.67 0.808911
Target:  5'- aGGCGcGGGCCgcgcgcggccgccgcCGACaGCGCGCGCGc -3'
miRNA:   3'- -CCGCuCUUGGa--------------GCUGcCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 63332 0.67 0.80803
Target:  5'- cGCGAaaGGCCUCcuCGGCGCGCGCc- -3'
miRNA:   3'- cCGCUc-UUGGAGcuGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 53946 0.67 0.80803
Target:  5'- cGGCGAGGgacuugaaccacGCCagCGGCGGCG-GCGCc- -3'
miRNA:   3'- -CCGCUCU------------UGGa-GCUGCCGUgCGUGua -5'
29581 5' -56.5 NC_006151.1 + 89952 0.67 0.80803
Target:  5'- gGGCGcggccaGGAACCgggCG-CGGCugGCgACGUa -3'
miRNA:   3'- -CCGC------UCUUGGa--GCuGCCGugCG-UGUA- -5'
29581 5' -56.5 NC_006151.1 + 117218 0.67 0.80803
Target:  5'- gGGCGc-GGCgUCGACGaCGCGCGCGUc -3'
miRNA:   3'- -CCGCucUUGgAGCUGCcGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 135485 0.67 0.80803
Target:  5'- cGCGcGGGCCa-GGCGGCGCGCGg-- -3'
miRNA:   3'- cCGCuCUUGGagCUGCCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 137317 0.67 0.80803
Target:  5'- cGCGcGGugCUCGACGcGCuCGCGCu- -3'
miRNA:   3'- cCGCuCUugGAGCUGC-CGuGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 118222 0.67 0.807147
Target:  5'- uGGCGGGcGCCcggaccaccgggcUCGGCGGCGgGCuCAc -3'
miRNA:   3'- -CCGCUCuUGG-------------AGCUGCCGUgCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 100889 0.68 0.799132
Target:  5'- --gGAGGugCUgCGccGCGGCGCGCGCGc -3'
miRNA:   3'- ccgCUCUugGA-GC--UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 112032 0.68 0.799132
Target:  5'- cGGCGGGAGCUggggcCGGCGG-GCGgGCGg -3'
miRNA:   3'- -CCGCUCUUGGa----GCUGCCgUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 72774 0.68 0.799132
Target:  5'- cGGCGGGuacGCCUCcugGAaGaGCGCGCACGg -3'
miRNA:   3'- -CCGCUCu--UGGAG---CUgC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 86453 0.68 0.799132
Target:  5'- cGGCGAGGcCCcCGACGagacGCucuuuGCGCACGUg -3'
miRNA:   3'- -CCGCUCUuGGaGCUGC----CG-----UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 119978 0.68 0.799132
Target:  5'- cGGCGAcGAGCUUCc-UGGCGCgGCGCAc -3'
miRNA:   3'- -CCGCU-CUUGGAGcuGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 131955 0.68 0.799132
Target:  5'- gGGCGAGGGCg--GGCGGCA-GUACGUg -3'
miRNA:   3'- -CCGCUCUUGgagCUGCCGUgCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 136419 0.68 0.799132
Target:  5'- cGCGGGGcCCcgCGGCGGCGCacgccGCGCGc -3'
miRNA:   3'- cCGCUCUuGGa-GCUGCCGUG-----CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 20627 0.68 0.799132
Target:  5'- uGGUGGGGGcgcccCCUgGGCGGCACcagggccgucaGCACAa -3'
miRNA:   3'- -CCGCUCUU-----GGAgCUGCCGUG-----------CGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.