miRNA display CGI


Results 101 - 120 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 128788 0.68 0.799132
Target:  5'- cGGCcucGGucGCCUCGGCGaGCgcgGCGCGCGUg -3'
miRNA:   3'- -CCGc--UCu-UGGAGCUGC-CG---UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 19716 0.68 0.790083
Target:  5'- aGGCGAGGGCCgagcCGAa-GCcCGCGCGg -3'
miRNA:   3'- -CCGCUCUUGGa---GCUgcCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 49486 0.68 0.790083
Target:  5'- aGCGuGGACUgagUCgGGCGuGCGCGCACAc -3'
miRNA:   3'- cCGCuCUUGG---AG-CUGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 90772 0.68 0.790083
Target:  5'- uGGCGGGG---UCGGCGG-GCGCGCAg -3'
miRNA:   3'- -CCGCUCUuggAGCUGCCgUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 96656 0.68 0.790083
Target:  5'- cGGCGAGGGCCcgggCGACguccucggGGCAgGCgGCGUc -3'
miRNA:   3'- -CCGCUCUUGGa---GCUG--------CCGUgCG-UGUA- -5'
29581 5' -56.5 NC_006151.1 + 68279 0.68 0.790083
Target:  5'- cGGCGccgGGcGCCaCGGCGGCcagGCGCGCGc -3'
miRNA:   3'- -CCGC---UCuUGGaGCUGCCG---UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 69990 0.68 0.790083
Target:  5'- cGGCGGcAGCgucagcacgcuCUCGACGGCGCccgucuGCACGUg -3'
miRNA:   3'- -CCGCUcUUG-----------GAGCUGCCGUG------CGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 129999 0.68 0.790083
Target:  5'- cGuCGGGGAUgUCcgaGACGGCGCGCGCc- -3'
miRNA:   3'- cC-GCUCUUGgAG---CUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 82654 0.68 0.789171
Target:  5'- cGGCGAGGgcggcccACC-CuGCGGCGCGcCGCGg -3'
miRNA:   3'- -CCGCUCU-------UGGaGcUGCCGUGC-GUGUa -5'
29581 5' -56.5 NC_006151.1 + 127815 0.68 0.780892
Target:  5'- cGCGAGGuCCUUG-CGGUucACGUACGUg -3'
miRNA:   3'- cCGCUCUuGGAGCuGCCG--UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 122494 0.68 0.780892
Target:  5'- gGGCGAGAcgGCg-CGcCGGCGCGCGgAc -3'
miRNA:   3'- -CCGCUCU--UGgaGCuGCCGUGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 130291 0.68 0.780892
Target:  5'- gGGCGcGcGCCggcCGACGGCgcggaGCGCGCGc -3'
miRNA:   3'- -CCGCuCuUGGa--GCUGCCG-----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 82427 0.68 0.780892
Target:  5'- aGGCGcGGGCgCUCGcGCgGGCGCuGCACAa -3'
miRNA:   3'- -CCGCuCUUG-GAGC-UG-CCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 36055 0.68 0.771567
Target:  5'- cGGCGAGGAUCUCcucuuCGGCcCGgGCGg -3'
miRNA:   3'- -CCGCUCUUGGAGcu---GCCGuGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 64552 0.68 0.771567
Target:  5'- cGGCGAGGccguggcgcgccAgCUCGACGaGCAggucgUGCACGUa -3'
miRNA:   3'- -CCGCUCU------------UgGAGCUGC-CGU-----GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 100699 0.68 0.771567
Target:  5'- cGCGAG-ACCUgGACcgaGGCGCGCGa-- -3'
miRNA:   3'- cCGCUCuUGGAgCUG---CCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 73762 0.68 0.768745
Target:  5'- aGUGGGGcacgcagggcacguGCUgggCGGCGGCGCGCACc- -3'
miRNA:   3'- cCGCUCU--------------UGGa--GCUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 78698 0.68 0.762118
Target:  5'- cGGCcGGGGCCUcgucgccgCGACGGCgcccgugggGCGCGCGc -3'
miRNA:   3'- -CCGcUCUUGGA--------GCUGCCG---------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 60867 0.68 0.762118
Target:  5'- -aCGAGGACC-CG-CGGCAgcCGCGCAg -3'
miRNA:   3'- ccGCUCUUGGaGCuGCCGU--GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 45537 0.68 0.762118
Target:  5'- cGCGGGAggGCCcgcuucccaCGACGGCGCGCcCGg -3'
miRNA:   3'- cCGCUCU--UGGa--------GCUGCCGUGCGuGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.