miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 81280 0.88 0.061581
Target:  5'- cGGCGGGGAUCUCGggcGCGGCGCGCGCGa -3'
miRNA:   3'- -CCGCUCUUGGAGC---UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 81506 0.75 0.372739
Target:  5'- cGGCGAGAGCgcggcccgcgugagCUCGGCGGCcgcggcgGCGCGCu- -3'
miRNA:   3'- -CCGCUCUUG--------------GAGCUGCCG-------UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 81678 0.66 0.89372
Target:  5'- cGGCGGuacGCCUCGGCGacggucGCcCGCGCGa -3'
miRNA:   3'- -CCGCUcu-UGGAGCUGC------CGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 82427 0.68 0.780892
Target:  5'- aGGCGcGGGCgCUCGcGCgGGCGCuGCACAa -3'
miRNA:   3'- -CCGCuCUUG-GAGC-UG-CCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 82654 0.68 0.789171
Target:  5'- cGGCGAGGgcggcccACC-CuGCGGCGCGcCGCGg -3'
miRNA:   3'- -CCGCUCU-------UGGaGcUGCCGUGC-GUGUa -5'
29581 5' -56.5 NC_006151.1 + 83022 0.82 0.147228
Target:  5'- cGGCGAGGGCCccaggUCGACGGUggagACGCGCAg -3'
miRNA:   3'- -CCGCUCUUGG-----AGCUGCCG----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 84398 0.66 0.86314
Target:  5'- gGGCGGGGAgCggGugGGCgcggugauaaggcgGCGCGCGg -3'
miRNA:   3'- -CCGCUCUUgGagCugCCG--------------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 84572 0.81 0.175952
Target:  5'- aGCGAGGGCCUCGACGcgcgccucgcGCugGCGCAc -3'
miRNA:   3'- cCGCUCUUGGAGCUGC----------CGugCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 84732 0.71 0.632113
Target:  5'- aGGCGcucguGGugCUCGAggagaCGGCGCGCGCc- -3'
miRNA:   3'- -CCGCu----CUugGAGCU-----GCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 85383 0.66 0.886287
Target:  5'- cGGCGcGAacgucggcGCCaacgaggUCGACGGCGCGgGCu- -3'
miRNA:   3'- -CCGCuCU--------UGG-------AGCUGCCGUGCgUGua -5'
29581 5' -56.5 NC_006151.1 + 85775 0.66 0.880003
Target:  5'- uGGCGcuGGAcgcGCaCUCGAUccGCGCGCGCGUg -3'
miRNA:   3'- -CCGC--UCU---UG-GAGCUGc-CGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 86150 0.66 0.89372
Target:  5'- cGGCGGGGAgCUCG-CGcugACGCGCGa -3'
miRNA:   3'- -CCGCUCUUgGAGCuGCcg-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 86453 0.68 0.799132
Target:  5'- cGGCGAGGcCCcCGACGagacGCucuuuGCGCACGUg -3'
miRNA:   3'- -CCGCUCUuGGaGCUGC----CG-----UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 87349 0.66 0.87208
Target:  5'- gGGCcuccAGGGCCU-GGCGGCccccgucGCGCACGUc -3'
miRNA:   3'- -CCGc---UCUUGGAgCUGCCG-------UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 87897 0.67 0.841943
Target:  5'- cGCGGGGcgucacggccccGCC-CGGCGGUaguagACGCACGUc -3'
miRNA:   3'- cCGCUCU------------UGGaGCUGCCG-----UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 88214 0.77 0.300244
Target:  5'- aGGCGAGGcgcGCCUcCGGgGGCACGCAgAg -3'
miRNA:   3'- -CCGCUCU---UGGA-GCUgCCGUGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 88256 0.69 0.733114
Target:  5'- cGGCGAagcCCUCGACGaaGCGCACc- -3'
miRNA:   3'- -CCGCUcuuGGAGCUGCcgUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 88935 0.72 0.569934
Target:  5'- cGGCGGuagaagcGGACCUCGAaggucucccCGGCGCGCGgGa -3'
miRNA:   3'- -CCGCU-------CUUGGAGCU---------GCCGUGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 89952 0.67 0.80803
Target:  5'- gGGCGcggccaGGAACCgggCG-CGGCugGCgACGUa -3'
miRNA:   3'- -CCGC------UCUUGGa--GCuGCCGugCG-UGUA- -5'
29581 5' -56.5 NC_006151.1 + 90050 0.66 0.89372
Target:  5'- gGGCGAu-GCCgaggCGcgccuCGGUGCGCACGUu -3'
miRNA:   3'- -CCGCUcuUGGa---GCu----GCCGUGCGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.